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Pilot Study of Fundamental Modification of the Gut Microbiota in the Treatment of Refractory Crohn's Disease

An Open-Label Pilot Study of Fundamental Modification of the Gut Microbiota in the Treatment of Refractory Crohn's Disease

Status
Completed
Phases
Phase 2
Study type
Interventional
Source
ClinicalTrials.gov
Registry ID
NCT03476317
Acronym
Holiday
Enrollment
10
Registered
2018-03-26
Start date
2018-07-12
Completion date
2020-12-31
Last updated
2022-02-09

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Crohn Disease

Brief summary

The purpose of this study is to determine the effect of a novel gut microbiota-targeted therapeutic regimen (bowel lavage and antibiotics with or without an antifungal) in the management of active Crohn's Disease (CD) or indeterminate colitis (IBDU) that is refractory to conventional, immunosuppressive therapy. In addition, the study will determine the effect of PEG lavage alone on fecal calprotectin and gut microbiota in patients who are undergoing a PEG lavage for clinical care.

Detailed description

Investigators will evaluate the efficacy of a novel treatment regimen, employing non-immunosuppressive medications, in the management of refractory CD or IBDU. Refractory patients include those patients who have experienced loss of responsiveness (LOR) or primary nonresponse to an immunomodulator or a biologic. Investigators will treat participants with a combination of gut microbiota-targeted therapies to restore a healthy gut microbiome composition. Investigators believe that this strategy will both treat the gut inflammation associated with inflammatory bowel disease (IBD) as well as salvage response to immune suppressive therapies. Investigators will also evaluate the effect of PEG lavage alone on fecal calprotectin and gut microbiota. Participants in this arm, will be undergoing a PEG lavage in preparation for a endoscopy for clinical care. They will be asked to provide stool samples, prior to and after their PEG lavage. Participants will not be receiving any investigational treatments.

Interventions

DRUGVancomycin

Oral suspension 4 times daily (Day 1-14)

Oral three times daily (Days 1-3)

DRUGCiprofloxacin

Oral twice daily (Days 4-14)

DRUGPolyethylene Glycol 3350

Dissolved in Gatorade on day 2

DRUGFluconazole

Orally once daily (Day 1-14)

Sponsors

University of Pennsylvania
CollaboratorOTHER
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
CollaboratorNIH
Children's Hospital of Philadelphia
Lead SponsorOTHER

Study design

Allocation
RANDOMIZED
Intervention model
PARALLEL
Primary purpose
TREATMENT
Masking
QUADRUPLE (Subject, Caregiver, Investigator, Outcomes Assessor)

Eligibility

Sex/Gender
ALL
Age
6 Years to No maximum
Healthy volunteers
No

Inclusion criteria

Group 1 Inclusion Criteria: * Males or females 6-18 years of age * Current weight \>10 kg (or 22 lb) * Ability to swallow pills * Normal kidney function * Normal Aspartate transaminase (AST), Alanine transaminase (ALT), and alkaline phosphatase * Active CD or IBDU defined as PCDAI ≥ 30 * C-Reactive Protein (CRP) ≥ 15mg/L (or 1.5mg/dL) or fecal calprotectin (FCP)\>350mcg/g (within one month of enrollment) * Have been treated with one of the following therapies for at least 8 weeks with primary nonresponse or an initial response, followed by loss of response \[LOR\] (self-reported worsening of symptoms for ≥ 7 days): azathioprine, 6-mercaptopurine, methotrexate, adalimumab, certolizumab, golimumab, infliximab, natalizumab, vedolizumab, or ustekinumab \*\*These medications must have been administered at standard, therapeutic dosages.

Exclusion criteria

* Known allergy or intolerance to aminoglycosides or any of the medications used in this study * Current use of one or more of the following medications: 5-fluorouracil, digoxin, anticoagulants, theophylline, phenytoin, probenecid, duloxetine, clozapine, sildenafil, hydrochlorothiazide, cyclosporine, hypoglycemics, terfenadine, tacrolimus, rifabutin, midazolam, and voriconazole * Known diagnosis of diabetes mellitus * Known or suspected structuring disease producing obstructive symptoms * Active Clostridium difficile infection * Prolonged QTc interval as seen on enrollment EKG * Current use of antibiotics * Starting or increasing the dose of an IBD related medication within 4 weeks of screening Group 2 Inclusion Criteria * Males or females 10 years of age and older. * Patients undergoing a clinical GI endoscopy due to suspicion for active intestinal inflammation determined by physician global assessment (PGA). * Undergoing a bowel preparation as part of clinical care. * Parental/guardian permission (informed consent) and if appropriate, child assent.

Design outcomes

Primary

MeasureTime frameDescription
Change in FCP in Group 2 Participantschange from baseline to day 12Change in fecal calprotectin between stool samples collected at baseline and day 12 after procedure in Group 2 participants.
Change in Disease Activity by Pediatric Crohn's Disease Activity IndexBaseline, Day 15The primary endpoint will be the change in disease activity, as measured by Pediatric Crohn's Disease Activity Index (PCDAI) score, between the enrollment visit and Day 15. All participants who withdraw for any reason prior to day 15 will be considered treatment failures. The Pediatric Crohn's Disease Activity Index is a clinical score which takes into account general well being, degree of abdominal pain, number of liquid stools per day, abdominal physical examination, and Crohn's disease complications.
Change in Disease Activity by Fecal Calprotectin (FCP)Baseline, Day 15The second primary outcome measure will be the change in disease activity, as measured by fecal calprotectin, between the enrollment visit and day 15. The fecal calprotectin is a stool test which measures intestinal inflammation.

Secondary

MeasureTime frameDescription
Change in C-reactive Protein (CRP)Baseline, Day 15A secondary outcome measure will be the change in C-reactive protein between the enrollment visit and day 15. The C-reactive protein is a blood test which measures systemic inflammation.
Safety and Tolerability of the Treatment Regimen Based on Medication Side Effects and/or Adverse Events105 days

Countries

United States

Participant flow

Participants by arm

ArmCount
Group 1-Fluconazole
Vancomycin oral suspension four times daily (Day 1-14), plus neomycin orally three times daily (Days 1-3), plus ciprofloxacin orally twice daily (Day 4-14), plus Polyethylene Glycol 3350 (Miralax) dissolved in Gatorade on day 2, plus fluconazole orally once daily (Day 1-14). Vancomycin: Oral suspension 4 times daily (Day 1-14) Neomycin: Oral three times daily (Days 1-3) Ciprofloxacin: Oral twice daily (Days 4-14) Polyethylene Glycol 3350: Dissolved in Gatorade on day 2 Fluconazole: Orally once daily (Day 1-14)
0
Group 1-Placebo
Vancomycin oral suspension four times daily (Day 1-14), plus neomycin orally three times daily (Days 1-3), plus ciprofloxacin orally twice daily (Day 4-14), plus Polyethylene Glycol 3350 (Miralax) dissolved in Gatorade on day 2, plus placebo. Vancomycin: Oral suspension 4 times daily (Day 1-14) Neomycin: Oral three times daily (Days 1-3) Ciprofloxacin: Oral twice daily (Days 4-14) Polyethylene Glycol 3350: Dissolved in Gatorade on day 2
0
Group 2
Collect stool samples for calprotectin in patients undergoing colonoscopy for clinical care to evaluate effect of bowel lavage alone on calprotectin.
10
Total10

Baseline characteristics

CharacteristicGroup 2Total
Age, Categorical
<=18 years
9 Participants9 Participants
Age, Categorical
>=65 years
0 Participants0 Participants
Age, Categorical
Between 18 and 65 years
1 Participants1 Participants
Age, Continuous16.5 years16.5 years
Calprotectin1254.5 mcg/g1254.5 mcg/g
Race and Ethnicity Not Collected0 Participants
Region of Enrollment
United States
10 participants10 participants
Sex: Female, Male
Female
2 Participants2 Participants
Sex: Female, Male
Male
8 Participants8 Participants

Adverse events

Event typeEG000
affected / at risk
EG001
affected / at risk
EG002
affected / at risk
deaths
Total, all-cause mortality
0 / 00 / 00 / 10
other
Total, other adverse events
0 / 00 / 00 / 10
serious
Total, serious adverse events
0 / 00 / 00 / 10

Outcome results

Primary

Change in Disease Activity by Fecal Calprotectin (FCP)

The second primary outcome measure will be the change in disease activity, as measured by fecal calprotectin, between the enrollment visit and day 15. The fecal calprotectin is a stool test which measures intestinal inflammation.

Time frame: Baseline, Day 15

Population: This outcome was specific to Group 1 and Group 1 study was not completed.

Primary

Change in Disease Activity by Pediatric Crohn's Disease Activity Index

The primary endpoint will be the change in disease activity, as measured by Pediatric Crohn's Disease Activity Index (PCDAI) score, between the enrollment visit and Day 15. All participants who withdraw for any reason prior to day 15 will be considered treatment failures. The Pediatric Crohn's Disease Activity Index is a clinical score which takes into account general well being, degree of abdominal pain, number of liquid stools per day, abdominal physical examination, and Crohn's disease complications.

Time frame: Baseline, Day 15

Population: This outcome was specific to Group 1 and we did not enroll patients into Group1as an identical study was simultaneously enrolling adult patients and results from the adult study were sufficient to make a conclusion without enrolling children.

Primary

Change in FCP in Group 2 Participants

Change in fecal calprotectin between stool samples collected at baseline and day 12 after procedure in Group 2 participants.

Time frame: change from baseline to day 12

Population: Group 1 study was not done.

ArmMeasureValue (MEDIAN)
Group 2Change in FCP in Group 2 Participants1501 mcg/g
p-value: 1Wilcoxon (Mann-Whitney)
Secondary

Change in C-reactive Protein (CRP)

A secondary outcome measure will be the change in C-reactive protein between the enrollment visit and day 15. The C-reactive protein is a blood test which measures systemic inflammation.

Time frame: Baseline, Day 15

Population: This outcome was specific to Group 1 and Group 1 study was not completed.

Secondary

Safety and Tolerability of the Treatment Regimen Based on Medication Side Effects and/or Adverse Events

Time frame: 105 days

Population: This outcome is specific to Group 1 and Group 1 study was not completed.

Source: ClinicalTrials.gov · Data processed: Feb 4, 2026