microbioom infection of the lungs pneumonia
Conditions
Interventions
None listed
Sponsors
Eligibility
Inclusion criteria
Inclusion criteria: (Patient population: being diagnosed with pneumonia (ICPC-code R81) at GP-office) Control group: participated in VGO-1-study Goat farmers: working on a goat farm
Exclusion criteria
Exclusion criteria: Control group: no exclusion criteria. There are contra-indications for performing lung function testing: - Heart failure including heart attack in the last three months - Chest or abdominal surgery in the past 3 months - Ascending aortic aneurysm - Haemoptysis - A brain, ear or eye surgery in the past 1 month - Usage of immunsuppressants/ chemotherapeutics - Immunodeficiency - Pregnancy (last trimester) - Participants discomfort (diarrhea, vomiting, common cold) Goat farmers: not able to communicate in Dutch
Design outcomes
Primary
| Measure | Time frame |
|---|---|
| Control subjects, goat farmers (and patients) • Pathogen detection in nasopharyngeal swab by multiplex PCR of 33 respiratory pathogens (for details, see 8.3); • Coxiella burnetii detection in nasopharyngeal swab by PCR; • Oropharyngeal microbiota composition (16S rRNA sequencing); • In subpopulation: nasopharyngeal/oropharyngeal virome and metagenome. • serum response to SARS-CoV-2 Control group • Pre-bronchodilator lung function; • Respiratory symptoms (questionnaire). Goat farmers • Serology on farm related pathogens including Coxiella burnetii; • Serology on farm related thermophilic bacteria as markers for Hypersensitivity Pneumonitis (Extrinsieke Allergische Alveolitis). | — |
Secondary
| Measure | Time frame |
|---|---|
| Control group • Atopic status, specific serum IgE to a panel of common inhalant allergens namely: grass, tree, house dust mite, cat and dog; Goat farmers • Respiratory symptoms and exposure related to type of farm work (questionnaire); • Gut microbioata composition in faecal sample (16S rRNA sequencing); | — |
Countries
Netherlands