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Optimizing Risk Assessment Through cfDNA in Pancreatic Neuroendocrine Tumors for Clinical Evaluation

Optimizing Risk Assessment Through cfDNA in Pancreatic Neuroendocrine Tumors for Clinical Evaluation: a Retrospective Study

Status
Active, not recruiting
Phases
Unknown
Study type
Observational
Source
ClinicalTrials.gov
Registry ID
NCT07817225
Acronym
ORACLE
Enrollment
30
Registered
2026-09-14
Start date
2026-09-12
Completion date
2027-12-12
Last updated
2026-09-16

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Pancreatic Neuroendocrine Tumor

Keywords

cfDNA, PanNET, prognostic signatures, biomarker, liquid biopsy

Brief summary

Non-functioning pancreatic neuroendocrine tumors (NF-PanNETs) are heterogeneous neoplasms of the pancreatic endocrine tissue, displaying variable clinical behavior from indolent to highly aggressive forms. Their often asymptomatic nature and lack of reliable preoperative biomarkers make clinical management particularly challenging. This exploratory study will investigate cell-free DNA (cfDNA) as a potential non-invasive biomarker in NF-PanNETs. cfDNA samples from approximately 30 patients, representing distinct clinical courses (active surveillance, indolent post-surgical, and aggressive post-surgical cases), will be analyzed using advanced methylome and nucleosome footprinting techniques. The aim is to evaluate cfDNA's diagnostic and prognostic potential to improve disease monitoring and support personalized therapeutic strategies in NF-PanNET patients.

Detailed description

Pancreatic neuroendocrine tumors (PanNETs) are rare, heterogeneous neoplasms arising from the endocrine tissue of the pancreas. Non-functioning pancreatic neuroendocrine tumors (NF- PanNETs) have traditionally been considered rare; however, their reported incidence has significantly increased over the past two decades. Current estimates suggest that approximately 1-5% of the general population may harbor undiagnosed NF-PanNETs. Given this prevalence, there is an increasing need for reliable diagnostic tools to distinguish high-risk, aggressive tumors from benign, indolent lesions. NF-PanNETs exhibit a wide spectrum of biological behavior, ranging from slow-growing, indolent tumors to highly aggressive variants prone to local invasion and distant metastases. However, due to their frequent asymptomatic presentation and the absence of reliable preoperative markers for tumor aggressiveness, clinical management remains challenging. Current diagnostic methods rely on imaging and invasive biopsies. However, this approach has limitations in detecting early-stage disease and assessing tumor dynamics. Indeed, it often leads to overtreatment in low-risk patients through unnecessary surgical interventions, while potentially undertreating those who might benefit from more aggressive therapeutic strategies, such as neoadjuvant therapy. In recent years, cell-free DNA (cfDNA) has emerged as a promising non-invasive biomarker in the oncology setting, proving to be extremely useful for diagnosis, prognosis and therapeutic purposes. In the specific context of PanNETs, there is limited research on the value of cfDNA. Despite showing encouraging results, the few existing investigations on this subject, have included only small and heterogeneous cohorts, varying primary tumor sites, stages and differentiation status. This exploratory study will analyze cfDNA profiles from approximately 30 NF-PanNET patients (10 under active surveillance, 10 with indolent tumors post-surgery, and 10 with aggressive tumors post-surgery) using advanced methylome and nucleosome footprinting technologies. Analyses in the three patient subgroups will be compared with data from a previously characterized cohort of healthy subjects. The goal is to assess cfDNA's diagnostic and prognostic utility, potentially offering a non-invasive tool for better disease management, monitoring and personalized patient care.

Interventions

OTHERcfDNA molecular profiling

Circulating-free DNA (cfDNA) will be extracted from plasma samples previously collected and currently stored at the San Raffaele Hospital (HSR) NETBank biobank. cfDNA profiling will be performed using methylome and nucleosome footprinting techniques. No therapeutic or experimental intervention will be performed.

Sponsors

Massimo Falconi
Lead SponsorOTHER

Study design

Observational model
COHORT
Time perspective
RETROSPECTIVE

Eligibility

Sex/Gender
ALL
Age
18 Years to No maximum
Healthy volunteers
No

Inclusion criteria

* Age ≥18 years. * Diagnosis of sporadic, well-differentiated, non-functioning pancreatic neuroendocrine tumor (NF-PanNET). * Signed informed consent for the use of plasma samples stored in the "NETbank" biobank. * Availability of pre-operative or surveillance plasma samples.

Exclusion criteria

* Genetic syndromes associated with NF-PanNETs (e.g., MEN1, VHL). * Functioning PanNETs. * Inadequate quality or quantity of circulating-free DNA (cfDNA) extracted from plasma samples.

Design outcomes

Primary

MeasureTime frameDescription
cfDNA Molecular ProfilingFrom enrollment until the day before surgery, or during scheduled visits for patients under active surveillance.To investigate the feasability of circulating-free DNA (cfDNA) assessment as a non- invasive biomarker for non-functioning pancreatic neuroendocrine tumors (NF-PanNETs). cfDNA concentrations and cfDNA epigenetic and fragmentomic signatures in plasma samples will be analysed.

Secondary

MeasureTime frameDescription
Predictive Value of cfDNA for Tumor AggressivenessFrom enrollment until the day before surgery, or during scheduled visits for patients under active surveillance.To correlate circulating-free DNA (cfDNA) levels with tumor aggressiveness and clinical outcomes, and to identify tissue-of-origin insights using cfDNA methylation and nucleosomal footprints.

Countries

Italy

Contacts

PRINCIPAL_INVESTIGATORStefano Partelli, MD, PhD

IRCCS San Raffaele

PRINCIPAL_INVESTIGATORDaniela Cesana, PhD

San Raffaele Telethon Institute for Gene Therapy

Outcome results

None listed

Source: ClinicalTrials.gov · Data processed: Sep 17, 2026