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Integration of Whole-Genome Sequencing PrOfiles and ImmuNe StATus in Cancer

Integration of Whole-Genome Sequencing Profiles and Immune Status in Cancer - a Molecular Profiling Protocol to Broaden the View on Drug Targets and Immune Contexture in Patients With Melanoma and Pancreatic Cancer

Status
Active, not recruiting
Phases
Unknown
Study type
Interventional
Source
ClinicalTrials.gov
Registry ID
NCT07796594
Acronym
SONATA
Enrollment
180
Registered
2026-09-01
Start date
2023-07-13
Completion date
2026-12-31
Last updated
2026-09-01

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Melanoma, Pancreas Cancer

Brief summary

The goal of this investigator-initiated tumour profiling study is to analyse the relation between genomic alterations and the tumour immune contexture in patients with advanced melanoma and pancreatic cancer with resistance to (immuno)therapy, aiming to identify targets and approaches for future (combination) treatment. The main endpoint of this study is the number of patients for whom both tumour WGS and immune profiles could be adequately obtained. The co-primary endpoint is the frequency of "inflamed" vs "immune excluded/desert" tumours (based on tumour infiltrating immune cells) in patients with i) NRAS/KRAS mutant vs wild-type tumours and ii) High vs low mutational tumour load. Participants will undergo an extra tumour biopsy procedure and venepuncture once during a tumour biopsy procedure done performed as part of standard treatment.

Interventions

PROCEDUREBiopsy

Participants will undergo an extra tumour biopsy procedure and venepuncture once.

Sponsors

Amsterdam UMC, location VUmc
Lead SponsorOTHER

Study design

Allocation
NA
Intervention model
SINGLE_GROUP
Primary purpose
BASIC_SCIENCE
Masking
NONE

Eligibility

Sex/Gender
ALL
Age
18 Years to No maximum
Healthy volunteers
No

Inclusion criteria

1. Diagnosis of locally advanced or metastatic cutaneous/mucosal melanoma or pancreatic cancer, meeting the following characteristics: a. Melanoma i. Patients with histologically proven locally advanced or metastatic melanoma (stage IV), with intrinsic or acquired resistance to treatment with immune checkpoint inhibition (anti-PD1 antibody +/- ipilimumab) ii. Patients with locoregional or distant recurrence either during, or within 3 months after completion or discontinuation of (neo)adjuvant anti-PD1-based immunotherapy for stage III melanoma. b. Pancreatic cancer i. Patients with histologically proven metastatic pancreatic cancer with progression under or after standard first-line chemotherapy with FOLFIRINOX. 2. Patients must be willing and able to provide written informed consent and be willing and able to comply with the study protocol. 3. Patients must be ≥18 years of age. 4. Metastatic or locoregional lesion of which a tumour needle biopsy can be safely obtained according to routine clinical practice.

Exclusion criteria

\- Patients with metastatic or locally advanced lesions which are not considered to be technically and/or safely biopsied.

Design outcomes

Primary

MeasureTime frameDescription
Number of tumour WGS and immune profilesthrough study completion, an average of 1 yearnumber of patients for whom both tumour WGS and immune profiles could be adequately obtained
"inflamed" vs "immune excluded/desert" tumoursthrough study completion, an average of 1 yearThe co-primary endpoint is the frequency of "inflamed" vs "immune excluded/desert" tumours (based on tumour infiltrating immune cells) in patients with i) NRAS/KRAS mutant vs wild-type tumours and ii) High vs low mutational tumour load

Secondary

MeasureTime frame
The percentage of patients with evaluable tumour DNA, RNA and (tissue and peripheral) immune profilesThrough study completion, an average of 2 year
The frequency of (potentially) actionable genomic alterationsThrough study completion, an average of 2 year
Differences between the post-immunotherapy and post-chemotherapy mutational/RNA-profiles with pre-treatment profiles (e.g. copy numbers, mutational load, genetic aberrations) of a similar cohort of patients who participatedAfter study completion, an average of 2 year
The relation between tumour and peripheral immune profiles and changes over time in patients with intrinsic vs acquired resistance to immune checkpoint inhibitionAfter study completion, an average of 2 year
The percentage of patients with melanoma with evaluable (phospho)proteomic profilesAfter study completion, an average of 2 year

Countries

Netherlands

Outcome results

None listed

Source: ClinicalTrials.gov · Data processed: Sep 2, 2026