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Whole Genome Sequencing (ChromoSeq®) for Acute Lymphoblastic Leukemia (ALL) Patients

A Prospective Study of Whole Genome Sequencing (ChromoSeq®) at Diagnosis for Pediatric, Adolescent, and Young Adult Acute Lymphoblastic Leukemia (ALL) Patients

Status
Suspended
Phases
Unknown
Study type
Observational
Source
ClinicalTrials.gov
Registry ID
NCT07313592
Enrollment
60
Registered
2026-01-02
Start date
2026-06-03
Completion date
2028-07-15
Last updated
2026-09-14

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Acute Lymphoblastic Leukemia

Keywords

Acute Lymphoblastic Leukemia, B-ALL, T-ALL, Next generation sequencing, Pediatric

Brief summary

This is a prospective specimen collection study evaluating the feasibility of using the ChromoSeq® assay for upfront classification in a real-time clinical setting of pediatric and young adult acute lymphoid leukemia (ALL) patients. Sixty patients will undergo collections of bone marrow and/or peripheral blood for the ChromoSeq® assay at time of initial workup, and the patients will then be followed for clinical outcomes for up to 65 months.

Interventions

DEVICEChromoSeq® assay testing

Bone marrow and/or peripheral blood sample will be collected and ChromoSeq® assay testing will be completed.

Sponsors

Washington University School of Medicine
Lead SponsorOTHER
McDonnell Center
CollaboratorUNKNOWN

Study design

Observational model
CASE_ONLY
Time perspective
PROSPECTIVE

Eligibility

Sex/Gender
ALL
Age
No minimum to 30 Years
Healthy volunteers
No

Inclusion criteria

Eligibility Criteria * Children and young adult patients (\< 30 years of age at time of study enrollment) treated at St. Louis Children's Hospital/Washington University School of Medicine. * Suspected diagnosis or suspected relapse of acute lymphoblastic leukemia (ALL), B- or T-cell. * Concurrent enrollment on a prospective therapeutic trial is allowed as this protocol makes no recommendations regarding treatment approach. * Ability to understand and willingness to sign an IRB approved written informed consent document. All patients and/or their parents or legal guardians must sign an IRB approved written informed consent document.

Design outcomes

Primary

MeasureTime frameDescription
Rate of success of ChromoSeq®Time of specimen collection to completion of results (total estimated time is 15 days)ChromoSeq® will be successful if the results on the first attempt in a real-time, clinical setting identifies recurrent structural variants and copy number alterations of conventional cytogenetics and karyotype. The success rate and the 95% confidence interval will be calculated.

Secondary

MeasureTime frameDescription
Comparison of time-to-results of ChromoSeq® and conventional cytogeneticsTime of specimen collection to 15 days after collection (total estimated time is 15 days)The proportion of results return within 15 days and the 95% confidence interval will be calculated.
Frequency of mismatch between LDA standard testing and ChromoSeq® defined Ph-like patients.Time of specimen collection to completion of LDA testing (total estimated time is 15 days)The outcome will be measured by determining the correlation of LDA testing on patients with neutral cytogenetics versus LDA testing on patients whose ChromoSeq® results display a Ph-like translocation for validation.

Countries

United States

Contacts

PRINCIPAL_INVESTIGATORMargaret Ferris, MD, PhD

Washington University School of Medicine

Outcome results

None listed

Source: ClinicalTrials.gov · Data processed: Sep 15, 2026