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Cell Free DNA Profiling As a Tool to Monitor Clinically-Relevant Events in Allogeneic Hematopoietic Stem Cell Transplantation

Cell Free DNA Profiling As a Tool to Monitor Clinically-Relevant Events in Allogeneic Hematopoietic Stem Cell Transplantation

Status
Recruiting
Phases
Unknown
Study type
Observational
Source
ClinicalTrials.gov
Registry ID
NCT06715046
Enrollment
30
Registered
2024-12-04
Start date
2024-01-31
Completion date
2026-12-31
Last updated
2024-12-04

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

GVHD - Graft-Versus-Host Disease, HSCT Engraftment, Infections After HSCT, Sinusoidal Obstruction Syndrome (SOS), Transplant Associated Microangiopathy TAM

Keywords

cfDNA, methylation, epigenetic profile, HSCT, liquid biopsy

Brief summary

Allogeneic hematopoietic stem cell transplantation (HSCT) is a life-saving treatment for people with severe blood-related diseases. However, it comes with serious risks, including a condition called graft-versus-host disease (GVHD), where the transplanted cells attack the patient's body. GVHD can occur in about 50% of patients acutely and 35% in a chronic form, potentially affecting organs like the skin, liver, and gastrointestinal system. Currently, doctors diagnose GVHD based on symptoms, as there are no easy tests available. Infections can also be a problem after HSCT, as dormant viruses may reactivate. These infections are monitored using specialized tests. Additionally, doctors use advanced methods, like analyzing minimal residual disease (MRD) and chimerism, to check for the risk of the original disease coming back. MRD is tracked by looking for specific genetic markers of the disease in the patient's blood or bone marrow. Another emerging tool involves analyzing cell-free DNA (cfDNA)-tiny fragments of DNA found in bodily fluids that come from dying cells. This technique, called liquid biopsy, has been revolutionary in areas like cancer detection, pregnancy testing, and organ transplants. For example, in organ transplants, cfDNA can indicate early signs of rejection, helping reduce the need for invasive biopsies. In HSCT, the use of cfDNA to monitor complications like GVHD or relapse has not been fully explored. This pilot study aims to investigate whether analyzing cfDNA using a technique called epigenomic profiling can help detect acute GVHD, as well as other post-transplant issues like infections, disease relapse, and chronic GVHD. The goal is to compare cfDNA analysis to current testing methods to see if it offers better or earlier detection of complications. This research could pave the way for improved, less invasive monitoring of HSCT patients, potentially leading to better outcomes and fewer complications.

Interventions

DIAGNOSTIC_TESTSample collation for cfDNA methylation analysis

Sample collation for cfDNA methylation analysis

DIAGNOSTIC_TESTSample collection for EV phenotype analysis

Analysis of the EV phenotype to evaluate their potential value as markers for GVHD, relapse and engraftment.

Sponsors

IRCCS San Raffaele
CollaboratorOTHER
University of Turin, Italy
Lead SponsorOTHER

Study design

Observational model
COHORT
Time perspective
PROSPECTIVE

Eligibility

Sex/Gender
ALL
Age
18 Years to No maximum
Healthy volunteers
No

Inclusion criteria

* Patient must be affected by an hematological malignancy requiring hematopoietic stem cell transplantation (HSCT).

Exclusion criteria

* Patients can not be 17 years old or yunger

Design outcomes

Primary

MeasureTime frameDescription
Epigenetic profiling of cfDNA in patients developing GVHDFrom enrollment to the end of post-HSCT follow-up of 12 monthsAnalysis of cfDNA methylation patterns in GVHD patients vs controls to define potential marker regions to be translationally utilized for early detections of the disease.

Secondary

MeasureTime frameDescription
Epigenetic profiling of cfDNA in patients developing post-HSCT infectionsFrom enrollment to the end of post-HSCT follow-up of 12 monthsAnalysis of cfDNA methylation patterns in patients developing post-HSCT transplantation infections vs controls to define potential marker regions to be translationally utilized for early detections of the condition.
Epigenetic profiling of cfDNA in patients with engraftment failureFrom enrollment to the end of post-HSCT follow-up of 12 monthsAnalysis of cfDNA methylation patterns in patients with engraftment failure vs controls.
Epigenetic profiling of cfDNA in relapsing patientsFrom enrollment to the end of post-HSCT follow-up of 12 monthsDescription: Analysis of cfDNA methylation patterns in relapsing patients vs controls.
Epigenetic profiling of cfDNA in patients developing transplant associated microangiopathy or sinusoidal obstructionFrom enrollment to the end of post-HSCT follow-up of 12 months
Evaluation of EV phenotypeFrom enrollment to the end of post-HSCT follow-up of 12 monthsEvaluation of circulating vesicle phenotype in as potential biomarker for GVHD, engraftment and relapse.

Countries

Italy

Contacts

Primary ContactSilvia Deaglio, MD/PhD
silvia.deaglio@unito.it+39 0116709535

Outcome results

None listed

Source: ClinicalTrials.gov · Data processed: Feb 4, 2026