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Antibiotics and Vaccine Immune Responses Study

A Human Experimental Medicine Study to Assess Whether the Gut Microbiota Regulates Specific and Non-specific Immune Responses to Vaccination

Status
Recruiting
Phases
Phase 4
Study type
Interventional
Source
ClinicalTrials.gov
Registry ID
NCT06148025
Acronym
AVIRS
Enrollment
348
Registered
2023-11-28
Start date
2023-11-23
Completion date
2028-10-01
Last updated
2026-09-17

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Vaccine Response Impaired

Keywords

Healthy participants, 18-35 years old, BCG vaccine, Yellow Fever vaccine, Antibiotics

Brief summary

The goal of this clinical trial is to examine immune responses to the BCG vaccine in healthy adults who have, or who have not, taken antibiotics to deplete their gut bacteria prior to vaccination. The main question it aims to answer is: does depletion of the gut microbiota lead to impaired BCG-induced protection against specific and non-specific to challenges to the immune system?

Detailed description

The study is divided into two sub-studies. The first sub-study (BCG re-challenge) is an experimental medicine study in 168 healthy participants to determine if depletion of the gut microbiota leads to impaired BCG-induced protection against a subsequent Mycobacterium bovis BCG intradermal challenge. The second sub-study (Yellow Fever vaccine) has a very similar experimental design to the first but will determine if depletion of the gut microbiota leads to impaired BCG-induced protection against other infections. To assess this, participants in this sub-study (n=180) will be re-challenged after 3 months with a live attenuated viral vaccine, the Yellow Fever vaccine, which induces a mild viremia. In both sub-studies, participants will initially be randomised to receive a 3 day course of antibiotics or none (comparator group). The two groups in each sub-study will be randomised again to receive either BCG vaccine or 0.9% NaCl placebo injection in the left arm. BCG re-challenge sub-study (Sub-study 1): Six months following randomisation, all participants will receive a BCG vaccine challenge in the right arm. A punch skin biopsy will be taken of this challenge site 2 weeks after the challenge to assess M. bovis BCG bacterial load in the skin. Yellow Fever vaccine sub-study (Sub-study 2): Three months following randomisation, all participants will receive a Yellow Fever vaccine challenge in the right arm. Blood samples will be collected from Yellow Fever vaccinated participants at day 3, 5 and 7 following Yellow Fever vaccine challenge to quantify Yellow Fever viral load in blood. All participants in both sub-studies will have blood samples collected at randomisation, before each vaccination, 2 weeks after each BCG vaccination and in the Yellow Fever vaccine sub-study at day 3, 5 and 7 following Yellow Fever vaccination. Stool samples will be collected prior to randomisation, and prior to each vaccination.

Interventions

BIOLOGICALBCG vaccine

0.1ml injected intradermally over the distal insertion of the deltoid muscle onto the humerus

BIOLOGICALYellow Fever vaccine

0.5ml injected subcutaneously

500mg every 6 hours for 3 days

DRUGNeomycin Oral Product

1000mg every 6 hours for 3 days

10mg every 8 hours

2mg tablets/capsules: 2 tablets/capsules initially, followed by 1 tablet after each loose motion, to a maximum of 8 tablets/capsules per day

Sponsors

South Australian Health and Medical Research Institute
Lead SponsorOTHER
Royal Adelaide Hospital
CollaboratorOTHER
Flinders University
CollaboratorOTHER
University of Sydney
CollaboratorOTHER
Telethon Kids Institute
CollaboratorOTHER
Centenary Institute
CollaboratorUNKNOWN

Study design

Allocation
RANDOMIZED
Intervention model
PARALLEL
Primary purpose
BASIC_SCIENCE
Masking
DOUBLE (Subject, Investigator)

Masking description

Participants and Investigator are blinded to BCG vaccine or placebo.

Intervention model description

Participants are allocated to Substudy 1 (BCG re-challenge) or Substudy 2 (Yellow Fever vaccine) Participants are randomised to receive * antibiotics or comparator (unblinded) and * BCG vaccine or placebo (blinded) * BCG vaccine or Yellow Fever vaccine (unblinded)

Eligibility

Sex/Gender
ALL
Age
18 Years to 35 Years
Healthy volunteers
Yes

Inclusion criteria

* 18-35 years old * Provided a signed and dated informed consent form * BCG naïve (Arm 1) and BCG and YF vaccine naïve (Arm 2) * Willing to take short antibiotic course * Willing to undergo a punch biopsy (Arm 1) * Willing to have up to 7 blood samples and 3 stool samples collected over 5-7 months * Not pregnant or intending to get pregnant for the duration of the study (a pregnancy test will be offered to females)

Exclusion criteria

* Previous BCG vaccination * Previous YF vaccination or YFV infection (only applies to participants included in the Yellow Fever Vaccine challenge sub-study) * Evidence of TB infection (assessed through a questionnaire - IGRA to confirm if needed) * People with contraindications for BCG vaccination: * malignancies involving bone marrow or lymphoid systems, primary or secondary immunodeficiencies, HIV infection * moderate/severe skin disease including eczema, dermatitis or psoriasis * requiring immunosuppressive drugs or other immune modifying drugs e.g. corticosteroids, non-biological immunosuppressants, biological agents (such as monoclonal antibodies against tumour necrosis factor (TNF)-alpha) * People with contraindications to YF vaccination: * History of thymus disease, including myasthenia gravis, thymoma, thymectomy, DiGeorge syndrome, thymic damage from chemoradiotherapy or graft-versus-host disease * YF vaccination is contraindicated in immunocompromised individuals, including individuals who have HIV infection, primary immunodeficiencies (including inherited IFNAR1 deficiency), or are taking corticosteroids or other immunosuppressive agents and haematopoietic stem cell transplant recipients * People who have had a haematopoietic stem cell transplant * Individuals with history of severe allergic reactions to egg or chicken proteins * Pregnant or breastfeeding or planning to become pregnant * History of renal disease/insufficiency * Tattoo obscuring BCG vaccination site(s) * Any history of severe allergic reaction or anaphylaxis to vaccination or antibiotics * People with chronic serious underlying illness * Have received any prescribed oral or intravenous antibiotic in the 28 days prior to study visits 1 and 4 (including isoniazid, rifampicin, streptomycin and ethambutol as these particular antibiotics have activity against M. bovis) * Have received any vaccinations in the 28 days prior to study visits 1 and 4

Design outcomes

Primary

MeasureTime frameDescription
Sub-study 1 BCG re-challenge2 weeks post BCG challengeMycobacterial load (Colony Forming Units (CFU)/mg tissue) in the skin biopsy site in BCG-vaccinated participants not exposed to antibiotics (BCG-No ABX) compared to BCG-vaccinated participants that were exposed to antibiotics (BCG-ABX)
Sub-study 2 Yellow Fever vaccine3, 5, 7 days post YFV challengePeak Yellow Fever viremia (viral copies/ml plasma) at day 3-7 post YFV vaccination in BCG-vaccinated participants not exposed to antibiotics (BCG-No ABX) compared to BCG-vaccinated participants that were exposed to antibiotics (BCG-ABX)

Secondary

MeasureTime frameDescription
Sub-study 1 - Bacterial loadBaseline (1-2 weeks before BCG/placebo vaccination), Day of vaccination and Day of BCG challengeBacterial load (16S rRNA gene copies/g stool) in ABX participants compared to No-ABX participants
Sub-study 2 - Bacterial loadBaseline (1-2 weeks before BCG/placebo vaccination), Day of vaccination and Day of YFV challengeBacterial load (16S rRNA gene copies/g stool) in ABX participants compared to No-ABX participants
Sub-study 1 - Microbiota diversityBaseline (1-2 weeks before BCG/placebo vaccination), Day of vaccination and Day of BCG challengeMicrobiota diversity (Shannon diversity index) in ABX participants compared to No-ABX participants
Sub-study 2 - Microbiota diversityBaseline (1-2 weeks before BCG/placebo vaccination), Day of vaccination and Day of YFV challengeMicrobiota diversity (Shannon diversity index) in ABX participants compared to No-ABX participants
Sub-study 1 - Mycobacterial load2 weeks post BCG challengeMycobacterial load (CFU/mg tissue) in the skin biopsy site of BCG-vaccinated participants compared to placebo-vaccinated participants
Sub-study 1 - Mycobacterial-specific IFNγ responsesBaseline (1-2 weeks before BCG/placebo vaccination), 2 weeks post vaccination, Day of BCG challenge and 2 weeks post BCG challengeMycobacterial-specific IFNγ responses (number of spot-forming units) in BCG-ABX participants compared to BCG-No ABX participants
Sub-study 1 - Mycobacterial-specific CD4+ T cell activation marker responsesBaseline (1-2 weeks before BCG/placebo vaccination), 2 weeks post vaccination, Day of BCG challenge and 2 weeks post BCG challengeMycobacterial-specific T cell activation-induced marker expression (frequency of OX40+CD137+ CD4+ T cells) in BCG-ABX participants compared to BCG-No ABX participants
Sub-study 1 - Mycobacterial-specific CD8+ T cell activation marker responsesBaseline (1-2 weeks before BCG/placebo vaccination), 2 weeks post vaccination, Day of BCG challenge and 2 weeks post BCG challengeMycobacterial-specific T cell activation-induced marker expression (frequency of CD69+CD137+ cells of CD8+ T cells) in BCG-ABX participants compared to BCG-No ABX participants
Sub-study 2 - Peak viraemia3, 5 and 7 days post YFV challengePeak viraemia (viral copies/ml plasma) at day 3-7 post YFV challenge in BCG-vaccinated participants compared to placebo-vaccinated participants
Sub-study 2 - Heterologous TNFα responses following R848 stimulationBaseline (1-2 weeks before BCG/placebo vaccination) and Day of YFV challengeTNFα cytokine production (pg/mL) following stimulation of PBMC with resiquimod (R848) in BCG-ABX participants compared to BCG-No ABX participants
Sub-study 2 - Heterologous TNFα responses following LPS stimulationBaseline (1-2 weeks before BCG/placebo vaccination) and Day of YFV challengeTNFα cytokine production (pg/mL) following stimulation of PBMC with lipopolysaccharide (LPS) in BCG-ABX participants compared to BCG-No ABX participants
Sub-study 2 - Heterologous TNFα responses following HKCA stimulationBaseline (1-2 weeks before BCG/placebo vaccination) and Day of YFV challengeTNFα cytokine production (pg/mL) following stimulation of PBMC with heat-killed Candida albicans (HKCA) in BCG-ABX participants compared to BCG-No ABX participants

Countries

Australia

Contacts

CONTACTDavid Lynn
david.lynn@sahmri.com+61 8 8128 4053
PRINCIPAL_INVESTIGATORDavid Lynn

South Australian Health and Medical Research Institute

PRINCIPAL_INVESTIGATORSimone Barry

Royal Adelaide Hospital

Outcome results

None listed

Source: ClinicalTrials.gov · Data processed: Sep 18, 2026