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Vitamin D Supplementation in RNA-seq Profiles of Single-core Prostate Samples, Among Veterans

Vitamin D Supplementation in RNA-seq Profiles of Single-core Prostate Samples, Including Diversity and Stress Determinants, Among Veterans

Status
Completed
Phases
Phase 2
Study type
Interventional
Source
ClinicalTrials.gov
Registry ID
NCT04621500
Acronym
VitD/RNA-seq
Enrollment
60
Registered
2020-11-09
Start date
2019-06-04
Completion date
2022-02-04
Last updated
2025-07-04

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Prostate Cancer, Stress Reaction, Vitamin D Deficiency

Brief summary

Veterans between the ages of 50-75, who are having a prostate biopsy, will be recruited for their permission to collect an extra biopsy core for RNA-sequencing. If the participants' treatment decision is Active Surveillance, they will be enrolled into the intervention phase of the study. They will receive supplementation with Vitamin D3 (4,000 IU) daily with repeat (surveillance) prostate biopsy one year later. At that time an extra prostate sample core will be collected for RNA-sequencing to determine changes over time. Measurements for allostatic load (body stress/inflammatory markers) will also be collected at the time of enrollment and at the repeat prostate biopsy visit.

Detailed description

This is an open-label pilot study. The goal is to investigate the transcription and biological pathways in prostate cancer that are especially relevant to prostate cancer disparities between African American and Caucasian men. Also, to determine any significant differences in the molecular signature that exist in African American and Caucasian men in relation to their Vitamin D levels. Recruitment will be at the Urology Clinic at the Ralph H. Johnson VA Medical Center in Charleston, SC. Men who are scheduled for a Standard of Care prostate biopsy will be consented for their permission to collect an extra prostate tissue core for RNA-sequencing. After the pathology report is discussed by their Urologist, and the treatment decision is Active Surveillance, the participant is enrolled into the Intervention Phase. At that time, baseline allostatic load measurements (Blood pressure, pulse, waist/hip ratio, height, and weight for BMI) and bloodwork: (lipid panel, HgbA1c, albumin and creatinine, IL-6, CRP, and DHEA-s (inflammatory markers) plus a Vitamin D level, will be collected. Vitamin D3 soft gels (4,000 IU) daily (six months' supply) will be dispensed. A Social Determinants survey will also be dispensed for subject completion. At the Urology Standard of Care six-month follow-up appointment, the vitamin D serum level will be collected and the next six months' supply of vitamin D3 will be dispensed. At the Urology Standard of Care follow-up (repeat at 1 year) surveillance prostate biopsy, an extra prostate tissue core will be collected for RNA-sequencing. The allostatic load measurements and bloodwork will also be obtained.

Interventions

DRUGcholecalciferol

Enrolled subjects will supplement with vitamin D3 at 4,000 IU daily for one year

PROCEDUREStandard of Care Prostate Biopsy - collection of 13th core for RNA-seq

RNA-seq analysis will be used to (a) identify changes in transcriptional profiles and biological pathways in the prostate between African American and Caucasian men and (b) compare Allostatic Load results to determine stress response and (c) identify changes in the molecular signature in relation to vitamin D levels

PROCEDUREStandard of Care Prostate Biopsies at baseline and after one year vitamin D3 supplementation

Pathology results of the prostate biopsies will be analyzed for changes in the (a) Gleason Score (b) the number of positive cores (0 to 12) and (c) the highest percentage of positive core involvement (0 to 100%).

DIAGNOSTIC_TESTAllostatic Load

Diagnostic Test: Allostatic Load Measurements at baseline and after one year vitamin D3 supplementation Allostatic Load measurements to determine body stress compared at baseline and after one year of vitamin D3 supplementation. Also compared with RNA-seq results to determine stress response. Other Names: Bloodwork for HgbA1c, lipid profile, creatinine, albumin and vitamin D levels. Body measurements: Ht. Wt, BMI, waist and hip measurements for waist/hip ratio. Measurements of systolic and diastolic blood pressure and heart rate

Sponsors

Ralph H. Johnson VA Medical Center
CollaboratorFED
National Institute on Minority Health and Health Disparities (NIMHD)
CollaboratorNIH
Medical University of South Carolina
Lead SponsorOTHER

Study design

Allocation
NA
Intervention model
SINGLE_GROUP
Primary purpose
BASIC_SCIENCE
Masking
NONE

Intervention model description

Single, open-label group

Eligibility

Sex/Gender
MALE
Age
50 Years to 75 Years
Healthy volunteers
Yes

Inclusion criteria

Recruitment: * scheduled for prostate biopsy * permission for investigators to follow subject's post biopsy diagnosis, treatment decision and follow-up care (including subsequent prostate biopsies). Enrollment: * diagnosis of prostate cancer * treatment recommendation or subject decision of Active Surveillance * agreement to supplement with vitamin D3 4,000 IU daily for approximately one year * standard of care repeat PSA at six months and surveillance prostate biopsy at one year

Exclusion criteria

* current vitamin D3 supplementation \> 2,000 IU daily * inability or unwillingness to continue to participate in the study

Design outcomes

Primary

MeasureTime frameDescription
Percentage of Participants With Change in Transcriptional Profiles After Vitamin D Supplementation.Scheduled prostate biopsy at baseline and repeat biopsy after 1 yearRNA-sequencing analysis will be utilized to identify changes in transcriptional profiles and biological pathways in the prostate between African American and Caucasian men.

Secondary

MeasureTime frameDescription
Median Percentage of Positive Cores at 1-year Post-baselineScheduled prostate biopsy at baseline and repeat biopsy after 1 yearDuring a routine prostate biopsy, 12 core samples are collected: 2 samples from the top right, front and back, 2 from the top left, front and back; 2 from the middle right and 2 from the middle left; 2 from the bottom right and 2 from the bottom left. When the 12 cores are examined under the microscope, the Pathologist identifies which cores contain cancer cells (or are positive for cancer). Therefore, the pathology report will identify the number of positive cores between 0 to 12. Changes to the baseline and repeat prostate biopsy positive core will be analyzed.
Identify Changes in Molecular Signature That Exist in AA and Caucasian Men in Relation to Vitamin D LevelsScheduled prostate biopsies at baseline and after one year vit D supplementation plus allostatic load measurements at baseline and one yeat visitsRNA-seq analyses of prostate tissue plus allostatic load measurements to determine stress response

Countries

United States

Participant flow

Recruitment details

Patients were recruited in the urology clinic at the Ralph H. Johnson VAMC. All patients who were eligible for active surveillance for prostate cancer were offered enrollment and were followed at the same location. They were recruited from 6/4/19 until 2/4/22

Participants by arm

ArmCount
Open Label
All enrolled subjects will receive vitamin D3 at 4,000 IU daily for approximately one year. cholecalciferol: Enrolled subjects will supplement with vitamin D3 at 4,000 IU daily for one year Standard of Care Prostate Biopsy - collection of 13th core for RNA-seq: RNA-seq analysis will be used to (a) identify changes in transcriptional profiles and biological pathways in the prostate between African American and Caucasian men and (b) compare Allostatic Load results to determine stress response and (c) identify changes in the molecular signature in relation to vitamin D levels Standard of Care Prostate Biopsies at baseline and after one year vitamin D3 supplementation: Pathology results of the prostate biopsies will be analyzed for changes in the (a) Gleason Score (b) the number of positive cores (0 to 12) and (c) the highest percentage of positive core involvement (0 to 100%).
60
Total60

Baseline characteristics

CharacteristicOpen Label
Age, Categorical
<=18 years
0 Participants
Age, Categorical
>=65 years
31 Participants
Age, Categorical
Between 18 and 65 years
29 Participants
Age (years)65 years
Body Mass Index (BMI)29.2 Measured in kilograms per meters squared
HbA1c level%5.6 Percentage
psa (mcg/l)6.21 micrograms per liter
Race (NIH/OMB)
American Indian or Alaska Native
0 Participants
Race (NIH/OMB)
Asian
0 Participants
Race (NIH/OMB)
Black or African American
33 Participants
Race (NIH/OMB)
More than one race
0 Participants
Race (NIH/OMB)
Native Hawaiian or Other Pacific Islander
0 Participants
Race (NIH/OMB)
Unknown or Not Reported
0 Participants
Race (NIH/OMB)
White
27 Participants
Region of Enrollment
United States
60 Participants
Sex: Female, Male
Female
0 Participants
Sex: Female, Male
Male
60 Participants
Total cholesterol (mg/dl)189 milligrams per deciliter
Vitamin D (ng/ml)28 nanograms per milliliter

Adverse events

Event typeEG000
affected / at risk
deaths
Total, all-cause mortality
0 / 60
other
Total, other adverse events
0 / 60
serious
Total, serious adverse events
0 / 60

Outcome results

Primary

Percentage of Participants With Change in Transcriptional Profiles After Vitamin D Supplementation.

RNA-sequencing analysis will be utilized to identify changes in transcriptional profiles and biological pathways in the prostate between African American and Caucasian men.

Time frame: Scheduled prostate biopsy at baseline and repeat biopsy after 1 year

Population: We analyzed all subjects and compared initial biopsy results and RNA sequencing information at baseline and after supplemental vitamin D3 one year later. We looked at modifications of signaling pathways from baseline and after treatment and also compared African-Americans vs. Caucasions

ArmMeasureValue (NUMBER)
Open LabelPercentage of Participants With Change in Transcriptional Profiles After Vitamin D Supplementation.100 percentage of subjects
Secondary

Identify Changes in Molecular Signature That Exist in AA and Caucasian Men in Relation to Vitamin D Levels

RNA-seq analyses of prostate tissue plus allostatic load measurements to determine stress response

Time frame: Scheduled prostate biopsies at baseline and after one year vit D supplementation plus allostatic load measurements at baseline and one yeat visits

Population: Number of positive cores per patient on a standard prostate biopsy involving systematic sampling of the prostate.

ArmMeasureValue (MEAN)
Open LabelIdentify Changes in Molecular Signature That Exist in AA and Caucasian Men in Relation to Vitamin D Levels17.4 number of positive cores
Secondary

Median Percentage of Positive Cores at 1-year Post-baseline

During a routine prostate biopsy, 12 core samples are collected: 2 samples from the top right, front and back, 2 from the top left, front and back; 2 from the middle right and 2 from the middle left; 2 from the bottom right and 2 from the bottom left. When the 12 cores are examined under the microscope, the Pathologist identifies which cores contain cancer cells (or are positive for cancer). Therefore, the pathology report will identify the number of positive cores between 0 to 12. Changes to the baseline and repeat prostate biopsy positive core will be analyzed.

Time frame: Scheduled prostate biopsy at baseline and repeat biopsy after 1 year

ArmMeasureValue (MEDIAN)
Open LabelMedian Percentage of Positive Cores at 1-year Post-baseline0.5 percentage of positive cores

Source: ClinicalTrials.gov · Data processed: Feb 4, 2026