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Ancillary Study of Methylation Biomarkers in a Randomized Controlled Trial of a Personalized Prevention of Colorectal Cancer

Methylomic Biomarkers, Magnesium Deficiency and Colon Neoplasia Prevention

Status
Completed
Phases
NA
Study type
Interventional
Source
ClinicalTrials.gov
Registry ID
NCT04196803
Enrollment
250
Registered
2019-12-12
Start date
2011-03-11
Completion date
2023-06-30
Last updated
2024-06-25

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Colorectal Cancer

Brief summary

Based on the magnesium tolerance test (MTT, gold standard for assessing magnesium (Mg) status), it was found that over 50% of participants in the US exhibited Mg deficiency. Studies suggest that the relationship between high Mg intake and disease risks may be varied by an individual's Mg status. Despite its importance, MTT is not commonly employed in routine clinical practice or research studies. Instead, serum Mg levels are typically used for clinical diagnosis, although this method has shown limited efficacy in identifying Mg deficiency accurately. Consequently, there is a pressing need to develop practical, sensitive, and specific biomarkers that can efficiently identify individuals with Mg deficiency. It is known that DNA methylation changes are inducible by environmental exposures, including nutrients, and reversible when the exposure disappears. There are two major types of DNA methylation modifications, 5-hydroxymethylcytosine (5-hmC) and 5-methylcytosine (5-mC). 5-mC is often associated with suppressed gene expression. 5-hmC, generated by the oxidation of 5-mC, is specifically enriched in expressed genes and play a critical role in activating and/or maintaining gene expression. We plan identify 5-hmC and 5-mC for Mg deficiency by a 4- phase comprehensive epigenome-wide association study (EWAS) using the samples collected in the Personalized Prevention of Colorectal Cancer Trial \[PPCCT, R01CA149633; PI, Dai & Yu\] . The parent trial \[NCT04196023\] that supports this ancillary research is a randomized controlled trial to evaluate the efficacy of reducing the Ca:Mg ratio among those who consume high Ca:Mg ratio diets to decrease the risk of colorectal cancer. For this ancillary trial research, the investigators are examining ancillary measures of Changes of Cytosine Modification in TMPRSS2.

Interventions

DIETARY_SUPPLEMENTMagnesium glycinate

Oral administration of magnesium glycinate daily for 12 weeks

DIETARY_SUPPLEMENTPlacebo

Oral administration of identical-appearing placebo daily for 12 weeks

Sponsors

National Cancer Institute (NCI)
CollaboratorNIH
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
CollaboratorNIH
Vanderbilt University Medical Center
Lead SponsorOTHER

Study design

Allocation
RANDOMIZED
Intervention model
PARALLEL
Primary purpose
PREVENTION
Masking
TRIPLE (Subject, Investigator, Outcomes Assessor)

Eligibility

Sex/Gender
ALL
Age
40 Years to 85 Years
Healthy volunteers
Yes

Inclusion criteria

1. Participants from our parent study (Personalized Prevention of Colorectal Cancer Trial, NCT#01105169, IRB#100106); 2. Participants consent to store/share biospecimens for future research.

Exclusion criteria

1\. Participants cannot provide their blood samples in the parent study.

Design outcomes

Primary

MeasureTime frameDescription
Changes of Cytosine Modification in TMPRSS2 (5-mC at cg16371860) by Magnesium Treatment Versus Placebo12 WeeksIncreases in 5-mC methylation at cg16371860 (the promoter) indicate a hindered process of transcription initiation and, subsequently, lower levels of TMPRSS2 expression. 5-mC methylation changes=value at 12 weeks minus value at baseline.

Secondary

MeasureTime frameDescription
Changes of Cytosine Modification in TMPRSS2 (5-hmC at cg16371860) by Magnesium Treatment Versus Placebo12 WeeksDecreases in 5-hmC methylation at cg16371860 (the promoter) indicate a hindered process of transcription initiation and, subsequently, lower levels of TMPRSS2 expression. 5-hmC methylation changes=value at 12 weeks minus value at baseline.
Changes of Cytosine Modification in TMPRSS2 (5-mC at cg26337277) by Magnesium Treatment Versus Placebo12 WeeksIncreases in 5-mC methylation at cg26337277 (the promoter) indicate a hindered process of transcription initiation and, subsequently, lower levels of TMPRSS2 expression. 5-mC methylation changes=value at 12 weeks minus value at baseline.
Changes of Cytosine Modification in TMPRSS2 (5-hmC at cg26337277) by Magnesium Treatment Versus Placebo12 WeeksDecreases in 5-hmC methylation at cg26337277 (the promoter) indicate a hindered process of transcription initiation and, subsequently, lower levels of TMPRSS2 expression. 5-hmC methylation changes=value at 12 weeks minus value at baseline.

Participant flow

Recruitment details

Participants, aged 40-85 y, with colorectal polyp or polyp-free individuals with high risk of colorectal cancer and had a calcium intake of ≥700 and \<2000 mg/d, and their calcium-to-magnesium intake ratio was \>2.6 (based on baseline two 24-hour dietary recalls) and have blood samples were recruited from Vanderbilt patient sources from March 11, 2011 to Jan 30, 2016 .

Participants by arm

ArmCount
Magnesium Treatment
Participants were assigned to magnesium glycinate Magnesium glycinate: Oral administration of magnesium glycinate daily for 12 weeks
119
Placebo
Participants were assigned to placebo group Placebo: Oral administration of identical-appearing placebo daily for 12 weeks
120
Total239

Withdrawals & dropouts

PeriodReasonFG000FG001
Overall StudyAdverse Event42
Overall StudyLost to Follow-up01
Overall StudyWithdrawal by Subject13

Baseline characteristics

CharacteristicPlaceboTotalMagnesium Treatment
Age, Categorical
<=18 years
0 Participants0 Participants0 Participants
Age, Categorical
>=65 years
42 Participants79 Participants37 Participants
Age, Categorical
Between 18 and 65 years
78 Participants160 Participants82 Participants
Age, Continuous61.2 years
STANDARD_DEVIATION 8.1
60.7 years
STANDARD_DEVIATION 7.9
60.1 years
STANDARD_DEVIATION 7.7
Race (NIH/OMB)
American Indian or Alaska Native
0 Participants0 Participants0 Participants
Race (NIH/OMB)
Asian
0 Participants0 Participants0 Participants
Race (NIH/OMB)
Black or African American
1 Participants3 Participants2 Participants
Race (NIH/OMB)
More than one race
0 Participants0 Participants0 Participants
Race (NIH/OMB)
Native Hawaiian or Other Pacific Islander
0 Participants0 Participants0 Participants
Race (NIH/OMB)
Unknown or Not Reported
0 Participants0 Participants0 Participants
Race (NIH/OMB)
White
119 Participants236 Participants117 Participants
Region of Enrollment
United States
120 participants239 participants119 participants
Sex: Female, Male
Female
58 Participants113 Participants55 Participants
Sex: Female, Male
Male
62 Participants126 Participants64 Participants

Adverse events

Event typeEG000
affected / at risk
EG001
affected / at risk
deaths
Total, all-cause mortality
0 / 1240 / 126
other
Total, other adverse events
4 / 1243 / 126
serious
Total, serious adverse events
0 / 1240 / 126

Outcome results

Primary

Changes of Cytosine Modification in TMPRSS2 (5-mC at cg16371860) by Magnesium Treatment Versus Placebo

Increases in 5-mC methylation at cg16371860 (the promoter) indicate a hindered process of transcription initiation and, subsequently, lower levels of TMPRSS2 expression. 5-mC methylation changes=value at 12 weeks minus value at baseline.

Time frame: 12 Weeks

Population: Overall analysis and stratified analysis by age (\<65 years, ≥ 65 years)

ArmMeasureGroupValue (MEAN)Dispersion
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-mC at cg16371860) by Magnesium Treatment Versus PlaceboAll0.007 units on CpG sitesStandard Deviation 0.024
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-mC at cg16371860) by Magnesium Treatment Versus PlaceboAge<650.012 units on CpG sitesStandard Deviation 0.022
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-mC at cg16371860) by Magnesium Treatment Versus PlaceboAge≥65-0.004 units on CpG sitesStandard Deviation 0.025
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-mC at cg16371860) by Magnesium Treatment Versus PlaceboAll-0.001 units on CpG sitesStandard Deviation 0.025
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-mC at cg16371860) by Magnesium Treatment Versus PlaceboAge<65-0.002 units on CpG sitesStandard Deviation 0.022
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-mC at cg16371860) by Magnesium Treatment Versus PlaceboAge≥65-0.001 units on CpG sitesStandard Deviation 0.031
p-value: <0.05Regression, Linear
Secondary

Changes of Cytosine Modification in TMPRSS2 (5-hmC at cg16371860) by Magnesium Treatment Versus Placebo

Decreases in 5-hmC methylation at cg16371860 (the promoter) indicate a hindered process of transcription initiation and, subsequently, lower levels of TMPRSS2 expression. 5-hmC methylation changes=value at 12 weeks minus value at baseline.

Time frame: 12 Weeks

Population: Overall analysis and stratified analysis by age (\<65 years, ≥ 65 years)

ArmMeasureGroupValue (MEAN)Dispersion
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg16371860) by Magnesium Treatment Versus PlaceboAll-0.001 units on CpG sitesStandard Deviation 0.002
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg16371860) by Magnesium Treatment Versus PlaceboAge<65-0.001 units on CpG sitesStandard Deviation 0.002
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg16371860) by Magnesium Treatment Versus PlaceboAge≥65-0.000 units on CpG sitesStandard Deviation 0.002
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg16371860) by Magnesium Treatment Versus PlaceboAll0.000 units on CpG sitesStandard Deviation 0.002
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg16371860) by Magnesium Treatment Versus PlaceboAge<650.000 units on CpG sitesStandard Deviation 0.002
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg16371860) by Magnesium Treatment Versus PlaceboAge≥650.000 units on CpG sitesStandard Deviation 0.002
p-value: >0.05Regression, Linear
Secondary

Changes of Cytosine Modification in TMPRSS2 (5-hmC at cg26337277) by Magnesium Treatment Versus Placebo

Decreases in 5-hmC methylation at cg26337277 (the promoter) indicate a hindered process of transcription initiation and, subsequently, lower levels of TMPRSS2 expression. 5-hmC methylation changes=value at 12 weeks minus value at baseline.

Time frame: 12 Weeks

Population: Overall analysis and stratified analysis by age (\<65 years, ≥ 65 years)

ArmMeasureGroupValue (MEAN)Dispersion
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg26337277) by Magnesium Treatment Versus PlaceboAll-0.000 units on CpG sitesStandard Deviation 0.001
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg26337277) by Magnesium Treatment Versus PlaceboAge<65-0.000 units on CpG sitesStandard Deviation 0.001
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg26337277) by Magnesium Treatment Versus PlaceboAge≥65-0.000 units on CpG sitesStandard Deviation 0.001
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg26337277) by Magnesium Treatment Versus PlaceboAll0.000 units on CpG sitesStandard Deviation 0.001
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg26337277) by Magnesium Treatment Versus PlaceboAge<650.000 units on CpG sitesStandard Deviation 0.001
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-hmC at cg26337277) by Magnesium Treatment Versus PlaceboAge≥650.000 units on CpG sitesStandard Deviation 0.001
p-value: =0.08Regression, Linear
Secondary

Changes of Cytosine Modification in TMPRSS2 (5-mC at cg26337277) by Magnesium Treatment Versus Placebo

Increases in 5-mC methylation at cg26337277 (the promoter) indicate a hindered process of transcription initiation and, subsequently, lower levels of TMPRSS2 expression. 5-mC methylation changes=value at 12 weeks minus value at baseline.

Time frame: 12 Weeks

Population: Overall analysis and stratified analysis by age (\<65 years, ≥ 65 years)

ArmMeasureGroupValue (MEAN)Dispersion
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-mC at cg26337277) by Magnesium Treatment Versus PlaceboAll0.000 units on CpG sitesStandard Deviation 0.001
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-mC at cg26337277) by Magnesium Treatment Versus PlaceboAge<65-0.000 units on CpG sitesStandard Deviation 0.002
Magnesium TreatmentChanges of Cytosine Modification in TMPRSS2 (5-mC at cg26337277) by Magnesium Treatment Versus PlaceboAge≥650.000 units on CpG sitesStandard Deviation 0.001
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-mC at cg26337277) by Magnesium Treatment Versus PlaceboAll0.000 units on CpG sitesStandard Deviation 0.002
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-mC at cg26337277) by Magnesium Treatment Versus PlaceboAge<65-0.000 units on CpG sitesStandard Deviation 0.002
PlaceboChanges of Cytosine Modification in TMPRSS2 (5-mC at cg26337277) by Magnesium Treatment Versus PlaceboAge≥650.000 units on CpG sitesStandard Deviation 0.002
p-value: >0.05Regression, Linear

Source: ClinicalTrials.gov · Data processed: Feb 4, 2026