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A Dietary Intervention Study on the Microbiome in Crohn's Disease Patients

A Single-center Open-label Study to Determine the Effect of Diet on Microbiome Signatures in Crohn's Disease Patients

Status
Completed
Phases
Unknown
Study type
Interventional
Source
ClinicalTrials.gov
Registry ID
NCT04065048
Enrollment
67
Registered
2019-08-22
Start date
2019-11-01
Completion date
2023-10-10
Last updated
2026-06-03

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Crohn Disease

Keywords

diet, inflammatory bowel disease, gut microbiome

Brief summary

This protocol is designed to compare the effectiveness of a soy-based diet or identical diet without soy given to patients with Crohn's disease (CD) in remission, patients with active CD, or healthy controls. The assigned diet will be compared to participant 'baseline' (pre-diet) in terms of its ability to change the gut bacteria and fecal butyrate, an important short-chain fatty acid (SCFA) that limits bowel inflammation, a characteristic of this debilitating disease.

Detailed description

The inflammatory bowel disease (IBD) subtype, Crohn's disease (CD) is a chronic and relapsing inflammatory disorder of the gastrointestinal tract. Although the precise etiology of IBD is not known, evidence suggests that environmental factors, including diet, contribute to its pathogenesis. A soy-based diet has been demonstrated to have numerous health benefits. This single-center open-label study will compare the effectiveness of a soy-based diet or an identical diet without soy to change the gut microbiota composition and fecal butyrate concentration to that of baseline (pre-diet) in patients with CD (remission or active disease) and healthy control subjects without CD. Participants will follow either a soy-based diet or an identical diet without soy to which they will be randomized for 7 days. No data collection or other study procedures will take place until the potential participant provides written informed consent to participate in the research study. The informed consent, screening, enrollment, and baseline data collection which make up visit 1 can occur on the same day or be completed across several days.

Interventions

OTHERSoy based diet

The diet will be based on the detailed descriptions according to the American Heart Association, US Food and Drug Administration (FDA), and the Soyfoods Association of North America Website, which all promote soy products as having beneficial nutrient profiles with a daily consumption of 25 grams or more of soy protein (average serving = 6.25 grams), upper limit of 50g.

OTHERNon-soy based diet

Diet of identical composition to the soy diet with the exception of soy.

Sponsors

Case Western Reserve University
Lead SponsorOTHER
University of California, Davis
CollaboratorOTHER
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
CollaboratorNIH
University Hospitals Cleveland Medical Center
CollaboratorOTHER

Study design

Allocation
RANDOMIZED
Intervention model
PARALLEL
Primary purpose
OTHER
Masking
NONE

Intervention model description

This is an open label single center study to compare the effect of a soy-based diet or an identical diet without soy on the composition and metabolite production of gut bacteria in Crohn's disease (CD) patients in remission or active disease, and in healthy controls. Crohn's subjects will be pre-screened by the treating gastroenterologist for eligibility criteria during their normally scheduled appointment. The treating gastroenterologist will ask suitable patients whether they are interested in participating in the described dietary intervention study during the patient appointment. Initial verbal consent will be obtained by the treating gastroenterologist. Healthy controls will be recruited in the same manner, as well as via a hospital flyer advertisement. Subjects will then be contacted by the study investigator to schedule a screening visit (visit 1) and if study eligibility is confirmed, and informed consent provided, enrolled into the study.

Eligibility

Sex/Gender
ALL
Age
18 Years to 65 Years
Healthy volunteers
No

Inclusion criteria

* CD subjects: Documented diagnosis of Crohn's disease. Control subjects: no documented diagnosis of CD. * CD subjects: Harvey Bradshaw Index (HBI) score \<4 ('CD remission'), or with HBI score \>8 ('CD moderate disease') * Capable of providing consent to participate * Access to technology that permits the daily completion of study related activities * Able to receive and have an adult sign for food shipments delivered to a work or home environment. * Negative pregnancy test at screening visit in females of childbearing potential * Able to take oral nutrition and medication intake for 3 months prior to and at time of study enrolment. * 'CD remission' subjects: No change in 'IBD related' medications within 8 weeks prior to normally scheduled appointment with treating gastroenterologist (pre-screening): biologics, immunosuppressants, corticosteroids.

Exclusion criteria

* Short bowel syndrome. * Hospitalized patients * Body mass Index \<19 kg/m or ≥35. * Known clinically significant liver/gallbladder/pancreatic disease/dysfunction * Individuals who lack consent capacity, including the mentally ill, prisoners, cognitively impaired participants, dementia patients. * Uncontrolled Diabetes Type I type II * Known drug abuse. * Known parasitic disease of the digestive system. symptomatic intestinal stricture. * Presence of an ostomy. * Known concurrent malignancy. * Other conditions that would be a contraindication to and of the study diets (e.g. Soy, peanut, wheat, gluten allergy.) or preclude the participant from completing the study * Start of new 'IBD related' medications within 8 weeks prior to enrollment: biologics, immunosuppressants, corticosteroids. * Documented C difficile colitis within four weeks of screening * Well-founded doubt about the patient's cooperation. * Existing pregnancy or lactation. * Current participation in another diet intervention, simultaneous participation in another clinical trial, or participation in any other dietary intervention trial within the last 30 days. * History of \<3 natural bowel movements per week. * Unable to access to technology that permits the daily completion of study related activities. * Currently consuming a soy-based diet

Design outcomes

Primary

MeasureTime frameDescription
Maintenance of Symptomatic Remission, Without Worsening of Any Existing Disease Activity During Study Period7 daysThe primary aim will measure the Crohn's Disease Activity Index (CDAI) at the enrollment and end of study visit. CDAI scores can range from 0 to \~600 (A score of less than 150 corresponds to relative disease quiescence (remission); 150 to 219, mildly active disease; 220 to 450, moderately active disease; and greater than 450, severe disease). Herein, a cut-off value of \<150 was selected so that most patients below this threshold would be rated by physicians as 'very well'. Change was calculated from two time points as the value at the later time point minus the value at the earlier time point \[i.e., value at 7 days (post) minus value at baseline/enrollment (pre)\].
Change in Fecal Myleoperoxidase (MPO) Activity7 daysChange in fecal myleoperoxidase (MPO) activity at day 7 vs day 0.

Secondary

MeasureTime frameDescription
Changes to Functional Composition of Gut Microbiotameasured after the 7-day diet interventionSecondary outcome will focus on changes to the functional composition of fecal gut microbiota, including bacterial butryate production after the diet intervention.
Percentage of Subjects Who Continue Diet Following Completion of Study6 monthsTo assess the percentage of patients who intend to continue the study diets when prepared food is no longer provided without cost, and the reasons for discontinuation of either diet (compared to resuming usual food habits).

Countries

United States

Contacts

PRINCIPAL_INVESTIGATORFabio Cominelli, MD, PhD

Case Western Reserve University, School of Medicine, Gastroenterology

Participant flow

Participants by arm

ArmCount
Crohn's on Soy Diet
Participants with Crohn's disease randomly assigned the Soy-based diet for 7 days. The diet will be preceded by a 12-hr overnight fast. .
16
Crohn's on Non-Soy Diet
Participants with Crohn's disease randomly assigned the non-Soy diet for 7 days. The diet will be preceded by a 12-hr overnight fast.
15
Healthy Controls on Soy Diet
Healthy participants (without Crohn's disease) randomly assigned the Soy-based diet for 7 days. The diet will be preceded by a 12-hr overnight fast.
14
Healthy Controls on Non-Soy Diet
Healthy participants (without Crohn's disease) randomly assigned the non-Soy diet for 7 days. The diet will be preceded by a 12-hr overnight fast.
15
Total60

Baseline characteristics

CharacteristicCrohn's on Non-Soy DietTotalCrohn's on Soy DietHealthy Controls on Non-Soy DietHealthy Controls on Soy Diet
Age, Continuous48.53 years
STANDARD_DEVIATION 11.3
41.55 years
STANDARD_DEVIATION 13.71
46.43 years
STANDARD_DEVIATION 12.72
35.2 years
STANDARD_DEVIATION 14.25
36.14 years
STANDARD_DEVIATION 13.05
Body Mass Index30.23 kg/m^2
STANDARD_DEVIATION 6.46
28.93 kg/m^2
STANDARD_DEVIATION 6.32
29.15 kg/m^2
STANDARD_DEVIATION 6.34
28.74 kg/m^2
STANDARD_DEVIATION 5.78
28.32 kg/m^2
STANDARD_DEVIATION 6.19
Ethnicity (NIH/OMB)
Hispanic or Latino
0 Participants1 Participants0 Participants1 Participants0 Participants
Ethnicity (NIH/OMB)
Not Hispanic or Latino
15 Participants59 Participants16 Participants14 Participants14 Participants
Ethnicity (NIH/OMB)
Unknown or Not Reported
0 Participants0 Participants0 Participants0 Participants0 Participants
Race (NIH/OMB)
American Indian or Alaska Native
0 Participants0 Participants0 Participants0 Participants0 Participants
Race (NIH/OMB)
Asian
0 Participants5 Participants0 Participants3 Participants2 Participants
Race (NIH/OMB)
Black or African American
0 Participants7 Participants3 Participants1 Participants3 Participants
Race (NIH/OMB)
More than one race
0 Participants0 Participants0 Participants0 Participants0 Participants
Race (NIH/OMB)
Native Hawaiian or Other Pacific Islander
0 Participants0 Participants0 Participants0 Participants0 Participants
Race (NIH/OMB)
Unknown or Not Reported
0 Participants0 Participants0 Participants0 Participants0 Participants
Race (NIH/OMB)
White
15 Participants48 Participants13 Participants11 Participants9 Participants
Region of Enrollment
United States
15 participants60 participants16 participants15 participants14 participants
Sex: Female, Male
Female
10 Participants41 Participants8 Participants12 Participants11 Participants
Sex: Female, Male
Male
5 Participants19 Participants8 Participants3 Participants3 Participants

Adverse events

Event typeEG000
affected / at risk
EG001
affected / at risk
EG002
affected / at risk
EG003
affected / at risk
deaths
Total, all-cause mortality
0 / 160 / 150 / 140 / 15
other
Total, other adverse events
1 / 160 / 151 / 140 / 15
serious
Total, serious adverse events
0 / 160 / 150 / 140 / 15

Outcome results

Primary

Change in Fecal Myleoperoxidase (MPO) Activity

Change in fecal myleoperoxidase (MPO) activity at day 7 vs day 0.

Time frame: 7 days

ArmMeasureValue (MEAN)Dispersion
Crohn's Patients on Soy DietChange in Fecal Myleoperoxidase (MPO) Activity-0.691 ug/mgStandard Deviation 1.471
Crohn's Patients on Non-soy DietChange in Fecal Myleoperoxidase (MPO) Activity0.7336 ug/mgStandard Deviation 1.483
Healthy Controls on Soy DietChange in Fecal Myleoperoxidase (MPO) Activity-0.0995 ug/mgStandard Deviation 0.767
Healthy Controls on Non-Soy DietChange in Fecal Myleoperoxidase (MPO) Activity0.5209 ug/mgStandard Deviation 1.036
p-value: 0.0093ANOVA
Primary

Maintenance of Symptomatic Remission, Without Worsening of Any Existing Disease Activity During Study Period

The primary aim will measure the Crohn's Disease Activity Index (CDAI) at the enrollment and end of study visit. CDAI scores can range from 0 to \ 600 (A score of less than 150 corresponds to relative disease quiescence (remission); 150 to 219, mildly active disease; 220 to 450, moderately active disease; and greater than 450, severe disease). Herein, a cut-off value of \<150 was selected so that most patients below this threshold would be rated by physicians as 'very well'. Change was calculated from two time points as the value at the later time point minus the value at the earlier time point \[i.e., value at 7 days (post) minus value at baseline/enrollment (pre)\].

Time frame: 7 days

ArmMeasureValue (MEAN)Dispersion
Crohn's Patients on Soy DietMaintenance of Symptomatic Remission, Without Worsening of Any Existing Disease Activity During Study Period-31.63 score on a scaleStandard Deviation 57.91
Crohn's Patients on Non-soy DietMaintenance of Symptomatic Remission, Without Worsening of Any Existing Disease Activity During Study Period-27.57 score on a scaleStandard Deviation 56.62
p-value: 0.469t-test, 2 sided
Secondary

Changes to Functional Composition of Gut Microbiota

Secondary outcome will focus on changes to the functional composition of fecal gut microbiota, including bacterial butryate production after the diet intervention.

Time frame: measured after the 7-day diet intervention

Secondary

Percentage of Subjects Who Continue Diet Following Completion of Study

To assess the percentage of patients who intend to continue the study diets when prepared food is no longer provided without cost, and the reasons for discontinuation of either diet (compared to resuming usual food habits).

Time frame: 6 months

Population: participants who responded to 6 month survey

ArmMeasureValue (COUNT_OF_PARTICIPANTS)
Crohn's Patients on Soy DietPercentage of Subjects Who Continue Diet Following Completion of Study8 Participants
Crohn's Patients on Non-soy DietPercentage of Subjects Who Continue Diet Following Completion of Study5 Participants
Healthy Controls on Soy DietPercentage of Subjects Who Continue Diet Following Completion of Study4 Participants
Healthy Controls on Non-Soy DietPercentage of Subjects Who Continue Diet Following Completion of Study1 Participants
p-value: 0.2487Fisher Exact

Source: ClinicalTrials.gov · Data processed: Jun 4, 2026