Non-small Cell Lung Cancer Stage I
Conditions
Brief summary
This is a pilot study to compare pre- and post-SABR core biopsies of stage I NSCLC tumors to identify SABR-induced immune-mediated tumor recognition based on a significant and specific expansion of T-cell clones using a novel T-cell receptor (TCR) sequencing assay. This will be coupled with (1) novel genomic analysis of candidate tumor antigens that may be released from the pre-SABR tumor and (2) functional validation assays to screen post-treatment peripheral blood T-cells for reactivity to these released candidate tumor antigens. In addition, cell-based analysis will be used to identify changes in key T-cell infiltrates into the post-SABR tumor.
Detailed description
Lung cancer is the leading cause of cancer death in the United States. While stereotactic ablative radiotherapy (SABR) is delivered as standard treatment in patients with medically inoperable stage I non-small cell lung cancer (NSCLC), an alarming 30-40% of these patients still develop disease recurrence just outside of the radiation field and deadly distant metastases in their lifetime. Furthermore, since the abscopal response was reported in advanced NSCLC where a systemic cancer response was induced in areas away from the irradiated site when radiation was combined with immunotherapy, multiple clinical trials are currently investigating the role of combining these two modalities. Significantly, how SABR alone increases immunogenicity of a tumor is unknown. There is a critical need to elucidate the mechanism by which SABR alone incites the immune system to better develop future rational combinations of immunotherapy with SABR. SABR induced cell death will ultimately activate downstream cytotoxic T-cells and cause T-cell influx into the tumor to enhance immunogenic tumor cell kill. This is accomplished with SABR-induced tumor antigen-both mutation-associated neoantigen and tumor-associated antigen- release, priming of downstream cytotoxic T-cells, leading to specific T-cell clonal expansion, and resultant influx of these activated cytotoxic T-cells into the tumor and blood to enhance immune-mediated tumor cell kill. Herein the investigator proposes a pilot study to compare pre- and post-SABR core biopsies of stage I NSCLC tumors to identify SABR-induced immune-mediated tumor recognition based on a significant and specific expansion of T-cell clones using a novel T-cell receptor (TCR) sequencing assay. This will be coupled with (1) novel genomic analysis of candidate tumor antigens that may be released from the pre-SABR tumor and (2) functional validation assays to screen post-treatment peripheral blood T-cells for reactivity to these released candidate tumor antigens. In addition, cell-based analysis will be used to identify changes in key T-cell infiltrates into the post-SABR tumor. The results of this pilot study may have the potential to translate into improved systemic outcomes for patients with NSCLC through future integrated trials of immune checkpoint blockade antibodies that specifically relieve the immunosuppression on the T-cell population found to be activated by SABR. Clarifying SABR-induced immune changes in the tumor and blood will identify pathways that may be exploited to enhance systemic immunity to kill micro-metastatic disease and mitigate relapse in the next generation of clinical trials. Additional corollary imaging studies using dual-energy (DE) computed tomography (CT), a novel imaging modality that improves the material decomposition ability of CTs, may identify new imaging markers for post-SABR treatment response by comparing DE-CT imaging characteristics with SABR fields and pathologic response.
Interventions
Post-SABR Biopsy
Sponsors
Study design
Intervention model description
Compare pre- and post-SABR core biopsies of stage I NSCLC tumors to identify SABR-induced immune-mediated tumor recognition based on a significant and specific expansion of T-cell clones using a novel T-cell receptor (TCR) sequencing assay.
Eligibility
Inclusion criteria
* Written informed consent obtained from the subject prior to performing any protocol-related procedures, including screening evaluations * Age \> 18 year * Confirmed non-small cell lung cancer after initial biopsies * Patient with accessible tumor for biopsy * Patient is to have sufficient initial core biopsy samples for tissue analyses * Stage I lung cancer * Adequate normal organ and marrow function * Patient with tumor amenable to SABR treatment as determined by a radiation oncologist * Subject is willing and able to comply with the protocol for the duration of the study including undergoing treatment and scheduled visits and examinations including follow up. * Post-menopausal status or negative urinary or serum pregnancy test for female pre-menopausal subjects. Women will be considered post-menopausal if they have been amenorrheic for 12 months without an alternative medical cause.
Exclusion criteria
* Primary tumors not amenable to serial core biopsies. * Prior thoracic radiation in the region that will be treated by SABR. * Patient may not be receiving any other concurrent investigational agents or chemotherapy. * Patient may not be receiving or received immunotherapy. * Patients may not be on or use steroids within 14 days before radiation, and from the duration of radiation to the time of the post-SABR biopsies and blood samples. * Female patients who are pregnant from screening to completion of SABR
Design outcomes
Primary
| Measure | Time frame | Description |
|---|---|---|
| Examine the T-cell Receptor Profile Changes Induced in the Tumor After SABR | Baseline to up to 7 days after SABR treatment | T-cell receptor (TCR) profile changes in the tumor using TCR sequencing. |
Secondary
| Measure | Time frame | Description |
|---|---|---|
| Evaluate Candidate Tumor Antigens Released From the Tumor by SABR | post-SABR | Candidate tumor antigens, mutation associated neo-antigens (MANAs), and tumor associated neo-antigens, (TAAs) released from the tumor by SABR |
| Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | 5 to 7 day post SABR | Semiquantitative immunohistochemistry scoring system was used to evaluate pathological changes, immune-cell populations (CD8, FoxP3), within the tumor. Semiquantitative scoring system: 0 None, 1: 1-5, 2: 6-10, 3: 11-20, 4: 21 or more positive cells per high powered field (400x). Score for each participant is reported. |
| Detection of Peripheral Neoantigen-specific T-cell Responses and Dynamics After SABR. | Within one year after SABR | Assessed by the Mutation-Associated Neoantigen Functional Expansion of Specific T-cells (MANAFEST) assay. Number of participants where a peripheral neoantigen-specific T-cell responses and dynamics was detected is reported. |
| Iodine Concentration (mg/mL) After SABR Measured With Dual-Energy CT Imaging | Pre-SABR, 5-7 days post-SABR | Dual-energy (DE) CT imaging characteristics after SABR. Evaluate iodine concentration measurement pre and post SABR treatment relationship using dual-energy (DE) CT imaging. |
| Number of Participants With Grade 2+ Toxicity Events | Pre-SABR, Post-SABR, 3, 6, 9 and 12 months. | Patients with grade 2+ toxicity measured by NCIs Common Terminology Criteria for Adverse Events (CTCAE 4.0), due to post-SABR biopsy. |
| Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | 5 to 7 day post SABR | Semiquantitative immunohistochemistry scoring system was used to evaluate pathological changes, (CD8, FoxP3, PD-L1/PD-1) expression within the peritumoral stoma after SABR. Semiquantitative scoring system: 0 None, 1: 1-5, 2: 6-10, 3: 11-20, 4: 21 or more positive cells per high powered field (400x). Score for each participant is reported. |
Countries
United States
Contacts
Johns Hopkins University
Participant flow
Participants by arm
| Arm | Count |
|---|---|
| Stage I NSCLC With SABR Therapy Participants receive stereotactic ablative radiotherapy (SABR) and pre-SABR biopsy as part of standard of care and then receive a post-SABR biopsy after receiving SABR. | 6 |
| Total | 6 |
Baseline characteristics
| Characteristic | Stage I NSCLC With SABR Therapy |
|---|---|
| Age, Categorical <=18 years | 0 Participants |
| Age, Categorical >=65 years | 6 Participants |
| Age, Categorical Between 18 and 65 years | 0 Participants |
| Age, Continuous | 75 Years |
| Ethnicity (NIH/OMB) Hispanic or Latino | 0 Participants |
| Ethnicity (NIH/OMB) Not Hispanic or Latino | 6 Participants |
| Ethnicity (NIH/OMB) Unknown or Not Reported | 0 Participants |
| Region of Enrollment United States | 6 Participants |
| Sex: Female, Male Female | 1 Participants |
| Sex: Female, Male Male | 5 Participants |
Adverse events
| Event type | EG000 affected / at risk |
|---|---|
| deaths Total, all-cause mortality | 1 / 6 |
| other Total, other adverse events | 6 / 6 |
| serious Total, serious adverse events | 0 / 6 |
Outcome results
Examine the T-cell Receptor Profile Changes Induced in the Tumor After SABR
T-cell receptor (TCR) profile changes in the tumor using TCR sequencing.
Time frame: Baseline to up to 7 days after SABR treatment
Population: None of the core-needle samples were able to be analyzed and no data was collected from samples.
Detection of Peripheral Neoantigen-specific T-cell Responses and Dynamics After SABR.
Assessed by the Mutation-Associated Neoantigen Functional Expansion of Specific T-cells (MANAFEST) assay. Number of participants where a peripheral neoantigen-specific T-cell responses and dynamics was detected is reported.
Time frame: Within one year after SABR
Population: Four patients had sufficient paired pre- and post-SABR tumor and blood samples for analysis to identify antigen-specific TCRs in the blood.
| Arm | Measure | Value (COUNT_OF_PARTICIPANTS) |
|---|---|---|
| Stage I NSCLC With SABR Therapy | Detection of Peripheral Neoantigen-specific T-cell Responses and Dynamics After SABR. | 2 Participants |
Dual-energy (DE) CT Imaging Characteristics After SABR
Dual-energy (DE) CT imaging characteristics after SABR. Evaluate relationship between dual-energy (DE) CT imaging characteristics, radiation dose, and early post-SABR pathologic outcomes after treatment with SABR.
Time frame: 1 year
Evaluate Candidate Tumor Antigens Released From the Tumor by SABR
Candidate tumor antigens, mutation associated neo-antigens (MANAs), and tumor associated neo-antigens, (TAAs) released from the tumor by SABR
Time frame: post-SABR
Population: None of the core-needle samples were able to be analyzed and no data was collected from samples.
Number of Participants With Grade 2+ Toxicity Events
Patients with grade 2+ toxicity measured by NCIs Common Terminology Criteria for Adverse Events (CTCAE 4.0), due to post-SABR biopsy.
Time frame: Pre-SABR, Post-SABR, 3, 6, 9 and 12 months.
| Arm | Measure | Value (NUMBER) |
|---|---|---|
| Stage I NSCLC With SABR Therapy | Number of Participants With Grade 2+ Toxicity Events | 0 Participants |
Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR.
Semiquantitative immunohistochemistry scoring system was used to evaluate pathological changes, immune-cell populations (CD8, FoxP3), within the tumor. Semiquantitative scoring system: 0 None, 1: 1-5, 2: 6-10, 3: 11-20, 4: 21 or more positive cells per high powered field (400x). Score for each participant is reported.
Time frame: 5 to 7 day post SABR
Population: Scores for each participant is reported.
| Arm | Measure | Group | Value (NUMBER) |
|---|---|---|---|
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 1, CD8 | 0 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 2, CD8 | 0 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 3, CD8 | 0 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 4, CD8 | NA score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 5, CD8 | NA score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 6, CD8 | 1 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 1, FoxP3 | 0 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 2, FoxP3 | NA score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 3, FoxP3 | 0 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 4, FoxP3 | NA score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 5, FoxP3 | NA score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes in the Tumor After SABR. | Participant 6, FoxP3 | 1 score on a scale |
Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR.
Semiquantitative immunohistochemistry scoring system was used to evaluate pathological changes, (CD8, FoxP3, PD-L1/PD-1) expression within the peritumoral stoma after SABR. Semiquantitative scoring system: 0 None, 1: 1-5, 2: 6-10, 3: 11-20, 4: 21 or more positive cells per high powered field (400x). Score for each participant is reported.
Time frame: 5 to 7 day post SABR
Population: Scores for each participant is reported
| Arm | Measure | Group | Value (NUMBER) |
|---|---|---|---|
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 1, CD8 | 4 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 2, CD8 | 2 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 3, CD8 | 3 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 4, CD8 | 4 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 5, CD8 | NA score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 6, CD8 | 3 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 1, FoxP3 | 3 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 2, FoxP3 | 3 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 3, FoxP3 | 1 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 4, FoxP3 | 3 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 5, FoxP3 | NA score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 6, FoxP3 | 3 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 1, PD1 | 3 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 2, PD1 | 2 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 3, PD1 | 2 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 4, PD1 | 4 score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 5, PD1 | NA score on a scale |
| Stage I NSCLC With SABR Therapy | Semiquantitative Scoring System to Describe the Influx of Key Tumor Infiltrating Lymphocytes Within the Peritumoral Stoma After SABR. | Participant 6, PD1 | 3 score on a scale |