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A Longitudinal Study to Identify IBS Phenotypes Using Fecal Microbiota and Hydrogen Breath Testing

A Longitudinal Study to Identify IBS Phenotypes Using Fecal Microbiota and Hydrogen Breath Testing

Status
Completed
Phases
Phase 4
Study type
Interventional
Source
ClinicalTrials.gov
Registry ID
NCT03219528
Enrollment
74
Registered
2017-07-17
Start date
2018-02-13
Completion date
2024-02-28
Last updated
2025-04-27

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Irritable Bowel Syndrome

Keywords

Irritable Bowel Syndrome, Diarrhea, Small Intestinal Bacterial Overgrowth, Gut Microbiota

Brief summary

Diarrhea-predominant irritable bowel syndrome (IBS-D) is a highly prevalent but poorly understood condition with limited treatment options. Current therapies, including a nonabsorbable antibiotic rifaximin or diet low in fermentable oligosaccharides, disaccharides, monosaccharides, and polyols (FODMAP), show efficacy in 50% or less of patients. In this proposal, participants with IBS-D will be randomized to receive either rifaximin or low FODMAP dietary intervention.

Detailed description

Diarrhea-predominant irritable bowel syndrome (IBS-D) is a highly prevalent but poorly understood condition with limited treatment options. Recent evidence has established small intestinal bacterial overgrowth (SIBO) and alterations in fecal microbiota as potential etiologies in the pathogenesis of IBS-D. Current therapies, including a nonabsorbable antibiotic rifaximin or diet low in fermentable oligosaccharides, disaccharides, monosaccharides, and polyols (FODMAP), show efficacy in 50% or less of patients \[1-4\]. It has been postulated that limited responses to therapies may stem from failure to identify distinct subgroups in IBS-D stratified by gut microbial profiles. In this proposal, participants with IBS-D will be randomized to receive either rifaximin or low FODMAP dietary intervention. The results of fecal microbiota-derived data as well as hydrogen breath tests will then be longitudinally followed to define SIBO. These methods will be used to test the hypotheses that: (i) distinct IBS-D phenotypes can be generated by defining fecal microbial populations as well as delineating the presence or absence of SIBO; and (ii) longitudinal analyses using microbe-derived metrics and SIBO status may relate to response to treatment with rifaximin or low FODMAP dietary intervention.

Interventions

Rifaximin 550 mg three times daily for 14 days

OTHERLow FODMAP Diet

Low FODMAP dietary intervention for 4 weeks

Sponsors

Michigan Institute for Clinical and Health Research (MICHR)
CollaboratorUNKNOWN
National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK)
CollaboratorNIH
University of Michigan
Lead SponsorOTHER

Study design

Allocation
RANDOMIZED
Intervention model
PARALLEL
Primary purpose
TREATMENT
Masking
NONE

Eligibility

Sex/Gender
ALL
Age
18 Years to No maximum
Healthy volunteers
No

Inclusion criteria

Adult subjects greater than or equal to 18 years of age who meet Rome IV criteria for diarrhea-predominant irritable bowel syndrome (IBS-D). Prior colonoscopy or sigmoidoscopy within the past 2 years with random colon biopsies to exclude the presence of microscopic colitis. IBS medications, including anti-depressants, will be allowed if the dose has been stable for at least 1 month before inclusion. Medications will be carefully tracked to follow any potential confounding issues.

Exclusion criteria

Underlying celiac disease, inflammatory bowel disease, or other organic disease that could explain their symptoms. Subjects with a history of GI tract surgery, except for cholecystectomy or appendectomy, will also be excluded from the study. Women who are pregnant or breastfeeding Antibiotics taken within 3 months prior to enrollment will not be permitted. Subjects on probiotics must discontinue their use at least 1 month prior to enrollment. Subjects who have previously received formal dietary education for IBS, including a low FODMAP diet, or previously received antibiotics, including rifaximin, for treatment of IBS-D will be excluded from the study.

Design outcomes

Primary

MeasureTime frameDescription
Change in Mean Daily Abdominal PainBaseline, Week 5Change in mean daily abdominal pain was measured using a visual analog scale (VAS) after intervention compared with baseline. VAS was a scale of 0 to 10, with higher numbers indicating a higher degree of pain; 0 indicated no pain and 10 indicated severe pain.
Change in Mean Daily BloatingBaseline, Week 5Change in mean daily bloating was measured using a visual analog scale (VAS) after intervention compared with baseline. VAS was a scale of 0 to 10, with higher numbers indicating a higher degree of bloating; 0 indicated no bloating and 10 indicated severe bloating.

Secondary

MeasureTime frameDescription
Change in Gastrointestinal System Ratings Scale (GSRS)Baseline, Week 5The GSRS was a disease-specific instrument of 15 items combined into five symptom clusters depicting Reflux, Abdominal Pain, Indigestion, Diarrhea, and Constipation. The GSRS had a seven-point graded Likert scale where 1 represents absence of troublesome symptoms and 7 represents very troublesome symptoms. The total range of the scale is 15 to 105 with 15 meaning low symptom burden and 105 meaning high symptom burden.
Change in Stool FormBaseline, Week 5The Bristol Stool Form Scale was a diagnostic tool used to assess various digestive issues based on the type and shape of stool. The total range of the scale was 1 to 7, with 1 indicating hard stool and 7 indicating liquid stool.
Change in Irritable Bowel Syndrome Quality of Life Instrument (IBS-QOL)Baseline, Week 5IBS-QOL was a condition-specific instrument for assessing health-related quality of life among persons with IBS. The IBS-QOL was comprised of 34 questions, each with a 5-point scale where the higher the value indicated the higher quality of life. The total range of the scale was 0 to 100, with 0 indicating no quality of life and 100 indicating extremely good quality of life.
24-hour Diet Recall/Intake - LactoseBaseline, Week 5Participants completed entries using the Nutrition Data System for Research (NDSR), which was a Windows-based dietary analysis program designed for the collection and analyses of 24-hour dietary recalls, food records, menus, and recipes. The NDSR was incapable of collecting data on all FODMAP-type foods, aside from lactose and gluten. The results represent data from lactose as a surrogate for all other FODMAP foods.
24-hour Diet Recall/Intake - GlutenBaseline, Week 5Participants completed entries using the Nutrition Data System for Research (NDSR), which was a Windows-based dietary analysis program designed for the collection and analyses of 24-hour dietary recalls, food records, menus, and recipes. The NDSR was incapable of collecting data on all FODMAP-type foods, aside from lactose and gluten. The results represent data from gluten as a surrogate for all other FODMAP foods.
Change in Psychological FunctionBaseline, Week 5The PHQ-9 was a multipurpose instrument for screening, diagnosing, monitoring, and measuring the severity of depression. It is comprised of 9 questions, each ranging from 0 to 3 with higher values indicating more severe depression symptoms. The total range of the scale was 1 to 27, with 1 indicating no or minimal depression and 27 indicating severe depression.
Change in Irritable Bowel Syndrome (IBS) Symptom Severity ScaleBaseline, Week 5The IBS Symptom Severity Scale was comprised of 5 questions each of which was on a scale of 0 to 100, with higher scores indicating more severe symptoms. The total range of the scale was 0 to 500, with 0 meaning no IBS symptoms and 500 indicating severe IBS symptoms.

Other

MeasureTime frameDescription
Glucose Breath Tests4 weeksGlucose breath tests (GBT) will be performed at baseline and repeated after intervention
Fecal Microbiota4 weeksChanges in fecal microbial diversity after intervention will be compared with baseline.

Countries

United States

Participant flow

Participants by arm

ArmCount
Rifaximin
Rifaximin 550 mg three times daily for 14 days Rifaximin 550 MG: Rifaximin 550 mg three times daily for 14 days
38
Low FODMAP Group
Low FODMAP diet for 4 weeks Low FODMAP Diet: Low FODMAP dietary intervention for 4 weeks
36
Total74

Withdrawals & dropouts

PeriodReasonFG000FG001
Overall StudyLost to Follow-up54
Overall StudyWithdrawal by Subject44

Baseline characteristics

CharacteristicRifaximinLow FODMAP GroupTotal
Age, Continuous44.2 years
STANDARD_DEVIATION 17.9
44.1 years
STANDARD_DEVIATION 16.4
44.1 years
STANDARD_DEVIATION 17
Body Mass Index (BMI)29.7 kg/m^2
STANDARD_DEVIATION 8.72
29.8 kg/m^2
STANDARD_DEVIATION 8.18
29.8 kg/m^2
STANDARD_DEVIATION 8.41
Ethnicity (NIH/OMB)
Hispanic or Latino
3 Participants2 Participants5 Participants
Ethnicity (NIH/OMB)
Not Hispanic or Latino
35 Participants34 Participants69 Participants
Ethnicity (NIH/OMB)
Unknown or Not Reported
0 Participants0 Participants0 Participants
Race (NIH/OMB)
American Indian or Alaska Native
0 Participants1 Participants1 Participants
Race (NIH/OMB)
Asian
1 Participants0 Participants1 Participants
Race (NIH/OMB)
Black or African American
2 Participants2 Participants4 Participants
Race (NIH/OMB)
More than one race
1 Participants0 Participants1 Participants
Race (NIH/OMB)
Native Hawaiian or Other Pacific Islander
0 Participants0 Participants0 Participants
Race (NIH/OMB)
Unknown or Not Reported
0 Participants0 Participants0 Participants
Race (NIH/OMB)
White
34 Participants33 Participants67 Participants
Region of Enrollment
United States
38 Participants36 Participants74 Participants
Sex: Female, Male
Female
30 Participants26 Participants56 Participants
Sex: Female, Male
Male
8 Participants10 Participants18 Participants

Adverse events

Event typeEG000
affected / at risk
EG001
affected / at risk
deaths
Total, all-cause mortality
0 / 360 / 29
other
Total, other adverse events
30 / 3626 / 29
serious
Total, serious adverse events
0 / 360 / 29

Outcome results

Primary

Change in Mean Daily Abdominal Pain

Change in mean daily abdominal pain was measured using a visual analog scale (VAS) after intervention compared with baseline. VAS was a scale of 0 to 10, with higher numbers indicating a higher degree of pain; 0 indicated no pain and 10 indicated severe pain.

Time frame: Baseline, Week 5

Population: Some participants who were randomized to an arm withdrew or were lost to follow up before receiving an intervention. The number of participants analyzed at each time point is based on a modified intent to treat (mITT) analysis.

ArmMeasureGroupValue (MEAN)Dispersion
RifaximinChange in Mean Daily Abdominal PainBaseline5.2 score on a scaleStandard Deviation 1.8
RifaximinChange in Mean Daily Abdominal PainWeek 53.9 score on a scaleStandard Deviation 2.5
Low FODMAP GroupChange in Mean Daily Abdominal PainWeek 53.8 score on a scaleStandard Deviation 2
Low FODMAP GroupChange in Mean Daily Abdominal PainBaseline5.3 score on a scaleStandard Deviation 1.6
Comparison: Baselinep-value: 0.78Mixed Models Analysis
Comparison: Week 5p-value: 0.88Mixed Models Analysis
Primary

Change in Mean Daily Bloating

Change in mean daily bloating was measured using a visual analog scale (VAS) after intervention compared with baseline. VAS was a scale of 0 to 10, with higher numbers indicating a higher degree of bloating; 0 indicated no bloating and 10 indicated severe bloating.

Time frame: Baseline, Week 5

Population: Some participants who were randomized to an arm withdrew or were lost to follow up before receiving an intervention. The number of participants analyzed at each time point is based on a mITT analysis.

ArmMeasureGroupValue (MEAN)Dispersion
RifaximinChange in Mean Daily BloatingBaseline4.9 score on a scaleStandard Deviation 1.9
RifaximinChange in Mean Daily BloatingWeek 54.0 score on a scaleStandard Deviation 2.4
Low FODMAP GroupChange in Mean Daily BloatingBaseline5.1 score on a scaleStandard Deviation 2.2
Low FODMAP GroupChange in Mean Daily BloatingWeek 53.7 score on a scaleStandard Deviation 2.1
Comparison: Baselinep-value: 0.77Mixed Models Analysis
Comparison: Week 5p-value: 0.58Mixed Models Analysis
Secondary

24-hour Diet Recall/Intake - Gluten

Participants completed entries using the Nutrition Data System for Research (NDSR), which was a Windows-based dietary analysis program designed for the collection and analyses of 24-hour dietary recalls, food records, menus, and recipes. The NDSR was incapable of collecting data on all FODMAP-type foods, aside from lactose and gluten. The results represent data from gluten as a surrogate for all other FODMAP foods.

Time frame: Baseline, Week 5

Population: Some participants who were randomized to an arm withdrew or were lost to follow up before receiving an intervention. The number of participants analyzed at each time point is based on a mITT analysis.

ArmMeasureGroupValue (MEAN)Dispersion
Rifaximin24-hour Diet Recall/Intake - GlutenBaseline6.7 grams per dayStandard Deviation 6
Rifaximin24-hour Diet Recall/Intake - GlutenWeek 57.2 grams per dayStandard Deviation 6.5
Low FODMAP Group24-hour Diet Recall/Intake - GlutenBaseline5.7 grams per dayStandard Deviation 5.6
Low FODMAP Group24-hour Diet Recall/Intake - GlutenWeek 51.7 grams per dayStandard Deviation 4.2
Secondary

24-hour Diet Recall/Intake - Lactose

Participants completed entries using the Nutrition Data System for Research (NDSR), which was a Windows-based dietary analysis program designed for the collection and analyses of 24-hour dietary recalls, food records, menus, and recipes. The NDSR was incapable of collecting data on all FODMAP-type foods, aside from lactose and gluten. The results represent data from lactose as a surrogate for all other FODMAP foods.

Time frame: Baseline, Week 5

Population: Some participants who were randomized to an arm withdrew or were lost to follow up before receiving an intervention. The number of participants analyzed at each time point is based on a mITT analysis.

ArmMeasureGroupValue (MEAN)Dispersion
Rifaximin24-hour Diet Recall/Intake - LactoseBaseline4.1 grams per dayStandard Deviation 5.5
Rifaximin24-hour Diet Recall/Intake - LactoseWeek 55.1 grams per dayStandard Deviation 6.7
Low FODMAP Group24-hour Diet Recall/Intake - LactoseBaseline7.3 grams per dayStandard Deviation 9.6
Low FODMAP Group24-hour Diet Recall/Intake - LactoseWeek 51.4 grams per dayStandard Deviation 2.3
Secondary

Change in Gastrointestinal System Ratings Scale (GSRS)

The GSRS was a disease-specific instrument of 15 items combined into five symptom clusters depicting Reflux, Abdominal Pain, Indigestion, Diarrhea, and Constipation. The GSRS had a seven-point graded Likert scale where 1 represents absence of troublesome symptoms and 7 represents very troublesome symptoms. The total range of the scale is 15 to 105 with 15 meaning low symptom burden and 105 meaning high symptom burden.

Time frame: Baseline, Week 5

Population: Some participants who were randomized to an arm withdrew or were lost to follow up before receiving an intervention. The number of participants analyzed at each time point is based on a mITT analysis.

ArmMeasureGroupValue (MEAN)Dispersion
RifaximinChange in Gastrointestinal System Ratings Scale (GSRS)Baseline52.0 score on a scaleStandard Deviation 13.2
RifaximinChange in Gastrointestinal System Ratings Scale (GSRS)Week 540.7 score on a scaleStandard Deviation 11
Low FODMAP GroupChange in Gastrointestinal System Ratings Scale (GSRS)Baseline52.1 score on a scaleStandard Deviation 13.3
Low FODMAP GroupChange in Gastrointestinal System Ratings Scale (GSRS)Week 540.1 score on a scaleStandard Deviation 12.2
Secondary

Change in Irritable Bowel Syndrome (IBS) Symptom Severity Scale

The IBS Symptom Severity Scale was comprised of 5 questions each of which was on a scale of 0 to 100, with higher scores indicating more severe symptoms. The total range of the scale was 0 to 500, with 0 meaning no IBS symptoms and 500 indicating severe IBS symptoms.

Time frame: Baseline, Week 5

Population: Some participants who were randomized to an arm withdrew or were lost to follow up before receiving an intervention. The number of participants analyzed at each time point is based on a mITT analysis.

ArmMeasureGroupValue (MEAN)Dispersion
RifaximinChange in Irritable Bowel Syndrome (IBS) Symptom Severity ScaleBaseline281.3 score on a scaleStandard Deviation 81
RifaximinChange in Irritable Bowel Syndrome (IBS) Symptom Severity ScaleWeek 5209.3 score on a scaleStandard Deviation 81.8
Low FODMAP GroupChange in Irritable Bowel Syndrome (IBS) Symptom Severity ScaleBaseline272.0 score on a scaleStandard Deviation 65.1
Low FODMAP GroupChange in Irritable Bowel Syndrome (IBS) Symptom Severity ScaleWeek 5194.7 score on a scaleStandard Deviation 79.1
Secondary

Change in Irritable Bowel Syndrome Quality of Life Instrument (IBS-QOL)

IBS-QOL was a condition-specific instrument for assessing health-related quality of life among persons with IBS. The IBS-QOL was comprised of 34 questions, each with a 5-point scale where the higher the value indicated the higher quality of life. The total range of the scale was 0 to 100, with 0 indicating no quality of life and 100 indicating extremely good quality of life.

Time frame: Baseline, Week 5

Population: Some participants who were randomized to an arm withdrew or were lost to follow up before receiving an intervention. The number of participants analyzed at each time point is based on a mITT analysis.

ArmMeasureGroupValue (MEAN)Dispersion
RifaximinChange in Irritable Bowel Syndrome Quality of Life Instrument (IBS-QOL)Baseline53.6 score on a scaleStandard Deviation 19.5
RifaximinChange in Irritable Bowel Syndrome Quality of Life Instrument (IBS-QOL)Week 562.6 score on a scaleStandard Deviation 20.4
Low FODMAP GroupChange in Irritable Bowel Syndrome Quality of Life Instrument (IBS-QOL)Baseline58.9 score on a scaleStandard Deviation 21.5
Low FODMAP GroupChange in Irritable Bowel Syndrome Quality of Life Instrument (IBS-QOL)Week 567.8 score on a scaleStandard Deviation 18.5
Secondary

Change in Psychological Function

The PHQ-9 was a multipurpose instrument for screening, diagnosing, monitoring, and measuring the severity of depression. It is comprised of 9 questions, each ranging from 0 to 3 with higher values indicating more severe depression symptoms. The total range of the scale was 1 to 27, with 1 indicating no or minimal depression and 27 indicating severe depression.

Time frame: Baseline, Week 5

Population: Some participants who were randomized to an arm withdrew or were lost to follow up before receiving an intervention. The number of participants analyzed at each time point is based on a mITT analysis.

ArmMeasureGroupValue (MEAN)Dispersion
RifaximinChange in Psychological FunctionBaseline8.6 score on a scaleStandard Deviation 6.5
RifaximinChange in Psychological FunctionWeek 56.2 score on a scaleStandard Deviation 4.9
Low FODMAP GroupChange in Psychological FunctionBaseline8.3 score on a scaleStandard Deviation 6.2
Low FODMAP GroupChange in Psychological FunctionWeek 55.8 score on a scaleStandard Deviation 4.3
Secondary

Change in Stool Form

The Bristol Stool Form Scale was a diagnostic tool used to assess various digestive issues based on the type and shape of stool. The total range of the scale was 1 to 7, with 1 indicating hard stool and 7 indicating liquid stool.

Time frame: Baseline, Week 5

Population: Some participants who were randomized to an arm withdrew or were lost to follow up before receiving an intervention. The number of participants analyzed at each time point is based on a mITT analysis.

ArmMeasureGroupValue (MEAN)Dispersion
RifaximinChange in Stool FormBaseline5.6 score on a scaleStandard Deviation 0.8
RifaximinChange in Stool FormWeek 55.0 score on a scaleStandard Deviation 1.1
Low FODMAP GroupChange in Stool FormBaseline5.6 score on a scaleStandard Deviation 0.8
Low FODMAP GroupChange in Stool FormWeek 55.3 score on a scaleStandard Deviation 0.9
Other Pre-specified

Fecal Microbiota

Changes in fecal microbial diversity after intervention will be compared with baseline.

Time frame: 4 weeks

Other Pre-specified

Glucose Breath Tests

Glucose breath tests (GBT) will be performed at baseline and repeated after intervention

Time frame: 4 weeks

Source: ClinicalTrials.gov · Data processed: Feb 4, 2026