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Genomics and Epigenomics of the Elderly Response to Pneumococcal Vaccines

Genomics and Epigenomics of the Elderly Response to Pneumococcal Vaccines

Status
Completed
Phases
Phase 4
Study type
Interventional
Source
ClinicalTrials.gov
Registry ID
NCT03104075
Enrollment
40
Registered
2017-04-07
Start date
2017-04-17
Completion date
2020-08-29
Last updated
2025-08-22

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Pneumonia, Aging

Keywords

Genomics, Epigenomics, Pneumococcal vaccine, Elderly

Brief summary

This is a prospective, single-site, randomized, then open-label study designed to develop a detailed transcriptional and epigenetic profile of the immune response to pneumococcal vaccination with conjugated and non-conjugated polysaccharide vaccines in the senescent immune system of older adults. In this study, 40 healthy adults ages 60 and older that have never received pneumococcal vaccination, will be randomized in a 1:1 ratio to receive Prevnar-13 (Pfizer), a conjugated 13-valent vaccine or Pneumovax 23 (Merck), a non-conjugated 23-valent vaccine. Following randomized assignment of vaccine, the study will be open-label. Six (6) study visits will occur over about 70 days, with an optional 7th visit for participants to receive a second vaccination with the other pneumococcal vaccine one to two years after randomization. Participants will provide blood samples for transcriptional, epigenetic and biological analyses pre- and post-vaccination.

Detailed description

This prospective, single-site, randomized, then open-label study is designed to develop a detailed transcriptional and epigenetic profile of the immune response to pneumococcal vaccination with conjugated and non-conjugated polysaccharide vaccines in the senescent immune system of older adults. This knowledge may lead to development of more effective vaccines through increased understanding of the effects of immunosenescence on mechanisms of immune response to pneumococcal vaccination in older adults elderly. Forty (40) healthy adults ages 60 and older that have never received pneumococcal vaccination, will be randomized in a 1:1 ratio to receive Prevnar-13 (Pfizer), a conjugated 13-valent vaccine or Pneumovax 23 (Merck), a non-conjugated 23-valent vaccine. Following randomized assignment of vaccine, the study will be open-label. The study sample will be drawn from the population of healthy older participants in the catchment area of UConn Health in Farmington, CT. The first six (6) study visits are planned to occur over 67 days at Days -7, 0, 1, 10, 28 (±3 d) and 60 (± 5d). Participants will provide blood samples for transcriptional, epigenetic and biological analyses pre- and post-vaccination. One to two years after receiving the randomly-assigned vaccination, participants may opt to receive administration of a second pneumococcal vaccine with the vaccine that they did not receive by random assignment at Visit 2 (Day 0). This second vaccine will be provided at no charge to the participant. Administration of this vaccine will occur at an optional Visit 7 for participants who choose to receive the second vaccine and will be scheduled at the participant's convenience one-two years after receiving the first pneumococcal vaccine. If the participant opts to receive the second vaccine within the study and attends optional Visit 7, blood samples for genomic and biologic analysis will be collected at the visit.

Interventions

BIOLOGICALPneumococcal 13valent Conj Vaccine Diphtheria CRM197 Protein

One to two years after receiving the randomly-assigned vaccination, participants may opt to receive administration of a second pneumococcal vaccine with Pneumovax 23

One to two years after receiving the randomly-assigned vaccination, participants may opt to receive administration of a second pneumococcal vaccine with Prevnar-13

Sponsors

UConn Health
CollaboratorOTHER
University of Alabama at Birmingham
CollaboratorOTHER
The Jackson Laboratory
Lead SponsorOTHER

Study design

Allocation
RANDOMIZED
Intervention model
PARALLEL
Primary purpose
BASIC_SCIENCE
Masking
NONE

Intervention model description

Randomized assignment to group will be in a 1:1 ratio utilizing block randomization in blocks of 10 to receive Prevnar-13 or Pneumovax 23. Following randomized assignment of vaccine, the study will be open-label.

Eligibility

Sex/Gender
ALL
Age
60 Years to No maximum
Healthy volunteers
Yes

Inclusion criteria

* Able and willing to provide written informed consent * Male or Female, 60 years of age or older * Willing to receive pneumococcal vaccination with Prevnar 13 (Wyeth/ Pfizer) or Pneumovax 23 (Merck), as randomly assigned. * Available to attend 6 study visits over 67 days (Visit 7 is optional at Day 365-720).

Exclusion criteria

* Previous pneumococcal vaccination with Prevnar 13 or Pneumovax 23. * History of anaphylactic/anaphylactoid or severe allergic reaction to any component of Pneumovax 23, Prevnar 13 or any diphtheria toxoid-containing vaccine. * Established diagnosis of diabetes * History of receiving Zostavax (shingles vaccine) within previous 4 weeks. (Study entry may be delayed to satisfy a 28-day interval between vaccinations) * Known history of any of the following co-morbid conditions: * Malignancy (participants without a recurrence in the last 5 years will be allowed) * Congestive Heart Failure * Cardiovascular Disease (unstable ≤ 6 months\*) * Kidney disease * Renal failure * Impaired hepatic function * Autoimmune disease such as: Rheumatoid Arthritis, systemic lupus erythematosus (SLE), Inflammatory Bowel Disease, etc. * Use of medicines during past 6 months known to alter immune response such as high-dose corticosteroids * HIV, AIDS or other Immunodeficiency * Recent (≤ 3 months) trauma or surgery * Current substance and/or alcohol abuse \* Unstable disease is defined as a change in therapy or hospitalization for worsening disease.

Design outcomes

Primary

MeasureTime frameDescription
Pneumococcal-specific Antibody Responses70 daysTo vaccinate healthy older participants with pneumococcal vaccines, collect longitudinal blood samples and assess pneumococcal-specific antibody responses. The unit of measurement used is log2 titer defined as a measure to quantify the overall strength of responses using the sum of all serotype responses. Data shown below is from longitudinal study timepoints (pre and post) first pneumococcal vaccine. At study endpoint, Visit 7, a second pneumococcal vaccine was administered and no further sample collection visits were conducted as proposed in the study design.
Pneumococcal-specific Antibody Responses - Fold Change Post First Vaccination70 daysFold change between the baseline and post first vaccination titers was calculated for each pneumococcal vaccine cohort. Data shown below is from longitudinal study timepoints (pre and post) first pneumococcal vaccine. At study endpoint, Visit 7, a second pneumococcal vaccine was administered and no further sample collection visits were conducted as proposed in the study design.

Secondary

MeasureTime frameDescription
Number of Genes Upregulated Following Vaccination With PCV13 or PPSV2310 days post first vaccinationRNA-seq and ATAC-seq to enable quantitative assessment of both coding RNA's and ncsRNA's as well as to resolve the epigenetic landscape of immune cells in the context of vaccine responses. We assessed the number of genes upregulated post first vaccination \[PCV13 or PPSV23\]. Data shown below is from longitudinal study timepoints (pre and post) first pneumococcal vaccine. At study endpoint, Visit 7, a second pneumococcal vaccine was administered and no further sample collection visits were conducted as proposed in the study design.
Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23baseline and 10 days post first vaccinationMeasure of functional status of immune cells in older participants following administration of a single pneumococcal vaccine, Prevnar13 or Pneumovax23, at baseline and 10 days post first vaccination. Data shown below is from longitudinal study timepoints (pre and post) first pneumococcal vaccine. At study endpoint, Visit 7, a second pneumococcal vaccine was administered and no further sample collection visits were conducted as proposed in the study design.

Countries

United States

Participant flow

Participants by arm

ArmCount
Prevnar 13
Prevnar 13 (Pneumococcal 13valent Conj Vaccine Diphtheria CRM197 Protein) will be administered at the single 0.5 ml dose, by intramuscular injection with routine clinical care. Pneumococcal 13valent Conj Vaccine Diphtheria CRM197 Protein: One to two years after receiving the randomly-assigned vaccination, participants may opt to receive administration of a second pneumococcal vaccine with Pneumovax 23
19
Pneumovax 23
Pneumovax 23 (Pneumococcal Vaccine Polyvalent) will be administered at the single 0.5ml dose, by intramuscular injection with routine clinical care. Pneumococcal Vaccine Polyvalent: One to two years after receiving the randomly-assigned vaccination, participants may opt to receive administration of a second pneumococcal vaccine with Prevnar-13
20
Total39

Withdrawals & dropouts

PeriodReasonFG000FG001
Overall StudyParticipant did not complete the last study visit due to hospitalization unrelated to the vaccine10

Baseline characteristics

CharacteristicPrevnar 13Pneumovax 23Total
Age, Continuous67.52 years
STANDARD_DEVIATION 7.15
69.25 years
STANDARD_DEVIATION 9.25
68.40 years
STANDARD_DEVIATION 7.8
BMI24.83 kg/m^2
STANDARD_DEVIATION 3.77
27.16 kg/m^2
STANDARD_DEVIATION 5.94
26.13 kg/m^2
STANDARD_DEVIATION 5.04
Ethnicity (NIH/OMB)
Hispanic or Latino
0 Participants0 Participants0 Participants
Ethnicity (NIH/OMB)
Not Hispanic or Latino
19 Participants20 Participants39 Participants
Ethnicity (NIH/OMB)
Unknown or Not Reported
0 Participants0 Participants0 Participants
Race (NIH/OMB)
American Indian or Alaska Native
0 Participants0 Participants0 Participants
Race (NIH/OMB)
Asian
0 Participants0 Participants0 Participants
Race (NIH/OMB)
Black or African American
1 Participants1 Participants2 Participants
Race (NIH/OMB)
More than one race
0 Participants0 Participants0 Participants
Race (NIH/OMB)
Native Hawaiian or Other Pacific Islander
0 Participants0 Participants0 Participants
Race (NIH/OMB)
Unknown or Not Reported
0 Participants0 Participants0 Participants
Race (NIH/OMB)
White
18 Participants19 Participants37 Participants
Sex: Female, Male
Female
9 Participants10 Participants19 Participants
Sex: Female, Male
Male
10 Participants10 Participants20 Participants

Adverse events

Event typeEG000
affected / at risk
EG001
affected / at risk
deaths
Total, all-cause mortality
0 / 190 / 20
other
Total, other adverse events
1 / 190 / 20
serious
Total, serious adverse events
0 / 190 / 20

Outcome results

Primary

Pneumococcal-specific Antibody Responses

To vaccinate healthy older participants with pneumococcal vaccines, collect longitudinal blood samples and assess pneumococcal-specific antibody responses. The unit of measurement used is log2 titer defined as a measure to quantify the overall strength of responses using the sum of all serotype responses. Data shown below is from longitudinal study timepoints (pre and post) first pneumococcal vaccine. At study endpoint, Visit 7, a second pneumococcal vaccine was administered and no further sample collection visits were conducted as proposed in the study design.

Time frame: 70 days

Population: 39 healthy volunteers

ArmMeasureGroupValue (MEAN)Dispersion
Prevnar 13Pneumococcal-specific Antibody ResponsesBaseline72.1 log2 titerStandard Deviation 19.4
Prevnar 13Pneumococcal-specific Antibody ResponsesPost first vaccination128.9 log2 titerStandard Deviation 19.5
Pneumovax 23Pneumococcal-specific Antibody ResponsesBaseline79.4 log2 titerStandard Deviation 18.6
Pneumovax 23Pneumococcal-specific Antibody ResponsesPost first vaccination120.9 log2 titerStandard Deviation 15
Primary

Pneumococcal-specific Antibody Responses - Fold Change Post First Vaccination

Fold change between the baseline and post first vaccination titers was calculated for each pneumococcal vaccine cohort. Data shown below is from longitudinal study timepoints (pre and post) first pneumococcal vaccine. At study endpoint, Visit 7, a second pneumococcal vaccine was administered and no further sample collection visits were conducted as proposed in the study design.

Time frame: 70 days

Population: 39 healthy volunteers

ArmMeasureValue (MEAN)Dispersion
Prevnar 13Pneumococcal-specific Antibody Responses - Fold Change Post First Vaccination55.6 Fold ChangeStandard Deviation 25.5
Pneumovax 23Pneumococcal-specific Antibody Responses - Fold Change Post First Vaccination41.6 Fold ChangeStandard Deviation 18.8
Secondary

Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23

Measure of functional status of immune cells in older participants following administration of a single pneumococcal vaccine, Prevnar13 or Pneumovax23, at baseline and 10 days post first vaccination. Data shown below is from longitudinal study timepoints (pre and post) first pneumococcal vaccine. At study endpoint, Visit 7, a second pneumococcal vaccine was administered and no further sample collection visits were conducted as proposed in the study design.

Time frame: baseline and 10 days post first vaccination

Population: A longitudinal analysis of different cell populations in whole blood samples was performed using flow cytometry at various time points. The number of plasmablasts and ICOS+ Tfh cells at baseline and post first vaccination at day 10 are reported below.

ArmMeasureGroupValue (MEAN)Dispersion
Prevnar 13Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23Plasmablasts cell count at baseline0.4 cells/microliterStandard Deviation 0.4
Prevnar 13Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23Plasmablasts cell count at Day 10 post first vaccination0.7 cells/microliterStandard Deviation 0.8
Prevnar 13Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23ICOS+Tfh cell count at baseline4.1 cells/microliterStandard Deviation 3.8
Prevnar 13Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23ICOS+Tfh cell count at Day 10 post first vaccination8.8 cells/microliterStandard Deviation 7.6
Pneumovax 23Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23ICOS+Tfh cell count at Day 10 post first vaccination6.8 cells/microliterStandard Deviation 3.9
Pneumovax 23Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23Plasmablasts cell count at baseline0.5 cells/microliterStandard Deviation 0.3
Pneumovax 23Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23ICOS+Tfh cell count at baseline4.1 cells/microliterStandard Deviation 2.4
Pneumovax 23Alterations to APCs, Tfh Cells or B Cells in Response to PCV13 and PPSV23Plasmablasts cell count at Day 10 post first vaccination1.6 cells/microliterStandard Deviation 2.5
Secondary

Number of Genes Upregulated Following Vaccination With PCV13 or PPSV23

RNA-seq and ATAC-seq to enable quantitative assessment of both coding RNA's and ncsRNA's as well as to resolve the epigenetic landscape of immune cells in the context of vaccine responses. We assessed the number of genes upregulated post first vaccination \[PCV13 or PPSV23\]. Data shown below is from longitudinal study timepoints (pre and post) first pneumococcal vaccine. At study endpoint, Visit 7, a second pneumococcal vaccine was administered and no further sample collection visits were conducted as proposed in the study design.

Time frame: 10 days post first vaccination

Population: To compare the transcriptional responses induced by vaccines on circulating PBMCs we generated RNA-seq data from 31 responders out of 39 total donors. We selected the topmost strong and weak responders from each participant arm (15 participants in Prevnar 13 arm, 16 participants in Pneumovax 23 arm) to generate RNA-seq data. The aim was to identify specific RNA transcriptional signatures of responsivity vs non-responsivity to the first administered pneumococcal vaccine.

ArmMeasureValue (NUMBER)
Prevnar 13Number of Genes Upregulated Following Vaccination With PCV13 or PPSV2326 Number of upregulated genes at day 10
Pneumovax 23Number of Genes Upregulated Following Vaccination With PCV13 or PPSV2342 Number of upregulated genes at day 10

Source: ClinicalTrials.gov · Data processed: Feb 4, 2026