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Trial to Evaluate Genomic Expression Profiles to Direct Preoperative Chemotherapy in Early Stage Breast Cancer

A Randomized Phase II Trial Evaluating the Performance of Genomic Expression Profiles to Direct the Use of Preoperative Chemotherapy for Early Stage Breast Cancer

Status
Terminated
Phases
Phase 2
Study type
Interventional
Source
ClinicalTrials.gov
Registry ID
NCT00636441
Enrollment
56
Registered
2008-03-14
Start date
2008-04-30
Completion date
2013-04-30
Last updated
2015-12-11

For informational purposes only — not medical advice. Sourced from public registries and may not reflect the latest updates. Terms

Conditions

Early-Stage Breast Cancer

Keywords

Early-Stage Breast Cancer, Preoperative systemic chemotherapy (PST), Genomic, Genomic Predictor, Genomic Expression Profiles, Randomized, Pathologic complete response (pCR), HER2 negative, Doxorubicin and docetaxel, Doxorubicin and cyclophosphamide

Brief summary

This multi-center randomized Phase II study assigned HER2-negative early-stage breast cancer patients to receive preoperative systemic chemotherapy in either a genomic-guided arm or a non-guided arm. The genomic-guided method (Arm 1) used genomic expression profiling to assign the preoperative therapy (Doxorubicin/Cyclophosphamide (AC) versus Docetaxel/Cyclophosphamide (TC), while Arm 2 used random assignment to these two therapies.

Detailed description

Primary Objective 1 was to test for an arm difference in pathological complete response rates. Secondary Objective 2 was to estimate and test the difference in pathologic complete response rates between drug-sensitive patients who received their preferred drug and drug-resistant patients randomized to AC or TC. Secondary objectives included: to determine the 60% cutoff for the genomic profiles resulted in a larger pathologic CR rate for the guided arm than for the unguided arm; to compare the pathologic CR rates of patients whose genomic predictive probabilities indicated that they were resistant to both chemotherapy regimens with the pathologic CR rates of patients whose genomic predictive probabilities indicated that they were sensitive to only one treatment and who were then randomly assigned to a treatment for which they were resistant (combining AC and TC subgroups); Secondary Objective 3 in patients with T2 and T3 tumors classified as requiring mastectomy at baseline, compare the guided and non-guided treatment arms on rates of breast conserving surgery with negative final margins; Secondary Objective in patients with T2 tumors classified as potential candidates for breast conservation, compare the guided and non-guided arms on rates of breast conserving surgery at first attempt; Secondary Objectives 5, 6, 7 and 8 to correlate genomic profiles (i.e., genomic predictive probabilities) with clinical response, disease-free survival, sites of recurrence, and overall survival; Secondary Objective 9:to compare the mean cost of guided versus non-guided treatment; and Secondary Objective 10 to assess patient perceptions of participating in a clinical trial that evaluated cancer genomics for preoperative systemic therapy of early-stage breast cancer. Objective 10 details: Due to space limitations in the Outcome Measure Description field, details are supplied here: To assess patient motivation and participation for study participation in a clinical trial evaluating cancer genomics for treatment patients provided responses for the following questions at both baseline (the day of chemotherapy start) and following post-surgical medical oncology evaluation: One of the goals of this study is to tailor your cancer treatments for you based upon a genomic analysis of your tumor. How much did the knowledge that the treatment is potentially tailored specifically for your tumor influence your decision to participate in this study? (Select One) Response 1: I did not know that the treatment was tailored. Response 2: I do not understand what tailored treatment based upon genomic analysis of my tumor means. Response 3: The information that this was a tailored treatment based upon genomic analysis of my tumor decreased my willingness to participate in this study. Response 4: The information that this was a tailored treatment based upon genomic analysis of my tumor was of neutral value in the decision making process to participate in this study and did not influence my decision to participate. Response 5: The information that this was a tailored treatment based upon genomic analysis of my tumor played a minor role in helping me decide to participate in the study. Response 6: The information that this was a tailored treatment based upon genomic analysis of my tumor played a major role in helping me decide to participate in the study. Response 7: The information that this was a tailored treatment based upon genomic analysis of my tumor was the primary reason that I decided to participate in the study.

Interventions

DRUGDoxorubicin/Cyclophosphamide (AC) or Docetaxel/Cyclophosphamide (TC)

Doxorubicin 60 mg/m² and Cyclophosphamide 600 mg/m² (AC) or Docetaxel 75 mg/m² and Cyclophosphamide 600 mg/m² (TC) every 3 weeks for 4 cycles as neoadjuvant therapy

Sponsors

United States Department of Defense
CollaboratorFED
Duke University
Lead SponsorOTHER

Study design

Allocation
RANDOMIZED
Intervention model
PARALLEL
Primary purpose
TREATMENT
Masking
QUADRUPLE (Subject, Caregiver, Investigator, Outcomes Assessor)

Eligibility

Sex/Gender
FEMALE
Age
18 Years to No maximum
Healthy volunteers
No

Inclusion criteria

1. Histologic Documentation: Patients must have a histologic (i.e., not just cytologic) diagnosis of invasive breast cancer by core biopsy. Excisional biopsy or incisional biopsy is not allowed. All breast cancer histologic types are allowed. 2. Stage: Any patient with a clinical T1c (\>1.5 cm) to T3 invasive breast cancer by the revised TNM staging system (AJCC 6th edition) will be eligible. Any N stage disease is allowed. No distant metastases allowed. 3. Tumor Site: Patients must have invasive cancer in the breast. Multifocal disease (i.e. confined to a single quadrant in the same breast) is allowed. Multicentric disease (i.e. disease in multiple breast quadrants) is not allowed. Determination of multifocal and multicentric disease status will be made by the evaluating surgeon; ambiguous cases will be reviewed by the principal investigator. Patients with synchronous contralateral invasive breast cancers are not eligible; prior contralateral breast cancer allowed as long as patient has not received prior chemotherapy or radiation therapy in the past 5 years. 4. Measurable Disease: Patients must have measurable disease in the breast by imaging studies (mammogram, ultrasound, or MRI), and must be greater than 1.5 cm in at least one dimension by one or more of the imaging assessments. 5. Conventional Biomarker Status: Standard clinical biomarkers for ER, PR, and HER2 must be obtained on the initial diagnostic core biopsy. The invasive cancer must be HER2 negative (i.e. immunohistochemistry score 1-2+ and/or FISH non-amplified). Any ER/PR status is allowed. Patients who are HER2 2+ on initial immunohistochemistry assessment will be further assessed by FISH. In this instance, patient will be consented and further screened for eligibility and have tissue acquired for genomic profiling. If the standard of care additional FISH testing is positive for HER2 gene amplification, the patient will not be randomized and will be treated in the same manner as screen failures. 6. Must be deemed a surgical candidate. 7. Fresh tissue biopsy material must be available for genomics analysis. 8. No prior chemotherapy, radiotherapy, or biologic/targeted therapy for the currently diagnosed breast cancer, or any other malignancy in the past 5 years, is allowed. No prior anthracycline or taxane therapy. 9. Prior malignancies are allowed if the patient is considered to be disease-free for 5 or more years and is deemed to be at low risk for recurrence. Patients with any prior diagnosis of in situ malignancies (melanoma, bladder, colon, cervical, basal cell, or squamous carcinoma) are eligible regardless of time from diagnosis. 10. Aged at least 18 years. 11. ECOG Performance Status 0-1. 12. Adequate Organ Function: 1. Total bilirubin ≤1.0 x the institutional ULN 2. Hepatic enzymes (AST (SGOT), ALT (SGPT)) ≤1.5x the institutional ULN 3. Alkaline Phosphatase ≤2.5 x ULN 4. Serum creatinine ≤2.0 mg/dl 5. Neutrophil count (ANC or AGC) ≥1000/ μL 6. Platelets ≥100,000/ μL 7. Cardiac Ejection Fraction ≥50% by MUGA, Echo or MRI. 13. Significant cardiac disease that would preclude the use of anthracyclines: No myocardial infarction in the last 6 months; history of congestive heart failure, serious cardiac arrhythmia requiring medication, active coronary artery disease/angina pectoris requiring therapy, uncontrolled hypertension defined as BP \>150/90 despite medication; any other unstable cardiac condition as perceived by treating physician or study PI. 14. No other serious medical or psychiatric illness. 15. Pregnancy: Patients may not be pregnant or nursing at the time of enrollment and other restrictions apply. 16. Signed written informed consent including HIPAA.

Exclusion criteria

1\. Patients who have received investigational drugs within 4 weeks prior to starting study drug and/or who have not recovered from side effects of such therapy are not eligible.

Design outcomes

Primary

MeasureTime frameDescription
Pathologic Complete Response (pCR) Rate in Patients With HER2-negative Early-stage Breast Cancer4-5 weeks after the fourth cycle of chemotherapy; approximately 16-17 weeksPathological complete response (pCR) was defined as the disappearance of all invasive disease in the breast or if only residual in situ or lymph node disease is found. The pCR rate is presented with its 95% confidence interval for the Guided and Non-guided arms.

Secondary

MeasureTime frameDescription
Percentage of Patients Who Had Breast-conserving Surgery With Negative Margins6 monthsThe percentage of patients who had breast-conserving surgery with negative margins, measured in patients with T2 and T3 tumors classified as requiring mastectomy at baseline.
To Percentage of Patients Who Had Breast-conserving Surgery at First Attempt.6 monthsThe percentage of patients who had breast-conserving surgery at first attempt, measured only in patients with T2 tumors classified as potential candidates for breast conservation.
Clinical Response Using WHO Criteria12 weeks, 2-3 weeks after the fourth cycle of chemotherapyWHO criteria are based on the sum of the products of the longest axis and the longest perpendicular axis. Bi-dimensional measurements were taken of all breast lesions and axillary nodes using the best imaging modality performed after completion of assigned therapy. Clinical Complete Response (cCR): Disappearance of all target lesions by physical exam and best imaging modality. Clinical Partial Response (cPR): At least a 30% decrease in the sum of the longest diameter (LD) of target lesions taking as reference the baseline sum LD. Stable Disease (SD): Neither sufficient shrinkage to qualify for PR nor sufficient increase to qualify for PD taking as references the sum LD at treatment initiation. Patients having a documented response with no reconfirmation of the response will be listed with stable disease. Progression (PD): At least a 20% increase in the sum of the LD of target lesions or the appearance of one or more new lesion.
Disease-free Survival2 yearsDisease-free survival is defined as the length of time from enrollment to local or distant disease recurrence, whichever comes first; disease-free deaths are censored. The 2-year disease-free survival rate is estimated with its 95% confidence interval.
Probabilities of Being Sensitive to AC and TC as Determined by the Patient's Genomic Signatures10 yearsTo determine in early stage breast cancer treated with PST whether genomic profiling can identify drug-sensitive and drug-resistant patients including a comparison of subgroups for the two individual regimens (i.e. AC and TC). To determine if the 60% cutoff for the genomic profiles is optimal in predicting the response to chemotherapy regimens.To describe the performance of the genomic profiles in assessing the relative responsiveness of: 1) Patients predicted to be resistant to both chemotherapy regimens; and 2) Patients randomly assigned to one treatment whose genomic profiles suggest receiving the other regimen (in both AC and TC subgroups).
Overall Survival2 yearsOverall survival is defined as the time from enrollment to death due to any cause. The 2-year overall survival rate is estimated with the Kaplan-Meier method.
Economic Impact of Using Genomic Assessment to Guide Management.5 yearsEconomic Impact (i.e., cost of care) will be calculated by first assessing the quantity of clinical resources used by each patient in the study arm, and then assigning a cost to each resource using cost information derived from a costing study to be undertaken outside of this protocol.
Patients' Perceptions of Participating in a Clinical Trial Evaluating Cancer Genomics for PST of Early-stage Breast Cancer.1 yearA short questionnaire was administered at baseline (the day chemotherapy was started) and following post-surgical medical oncology evaluation to assess the patient's understanding of the study being conducted, and the patient's expectations of the treatment. Due to space limitations, the full survey is presented in the Detailed Description.
Sites of Recurrence10 yearsSites of Recurrence is a categorical outcome whose possible values are the organ-specific sites at which disease recurrence was observed. A patient may recur at more than one site.

Countries

United States

Participant flow

Participants by arm

ArmCount
Guided AC Sensitive
Genomically-guided \>60% probability of response to AC AC: Doxorubicin 60 mg/m² and Cyclophosphamide 600 mg/m² (AC) every 3 weeks for 4 cycles as neoadjuvant therapy
6
Guided TC Sensitive
Genomically-guided treatment \>60% probability of response to TC TC: Docetaxel 75 mg/m² and Cyclophosphamide 600 mg/m² (TC) every 3 weeks for 4 cycles as neoadjuvant therapy
7
Guided AC Non-sensitive
Genomics guided treatment \<60% probability of response to both AC and TC; randomized to AC AC: Doxorubicin 60 mg/m² and Cyclophosphamide 600 mg/m² (AC) every 3 weeks for 4 cycles as neoadjuvant therapy
6
Guided TC Non-Sensitive
Genomics guided treatment \<60% probability of response to both AC and TC; randomized to TC TC: Docetaxel 75 mg/m² and Cyclophosphamide 600 mg/m² (TC) every 3 weeks for 4 cycles as neoadjuvant therapy
6
Non-guided AC
Non-genomics guided treatment; randomized to AC AC: Doxorubicin 60 mg/m² and Cyclophosphamide 600 mg/m² (AC) every 3 weeks for 4 cycles as neoadjuvant therapy
6
Non-guided TC
Non-genomics guided treatment; randomized to TC TC: Docetaxel 75 mg/m² and Cyclophosphamide 600 mg/m² (TC) every 3 weeks for 4 cycles as neoadjuvant therapy
7
Screen Failure18
Total56

Withdrawals & dropouts

PeriodReasonFG000FG001FG002FG003FG004FG005FG006
Overall StudyAdverse Event0110010
Overall StudyLate, ineligible0000001
Overall StudyScreen Failure00000017

Baseline characteristics

CharacteristicGuided AC SensitiveGuided TC SensitiveGuided AC Non-sensitiveGuided TC Non-SensitiveNon-guided ACNon-guided TCScreen FailureTotal
Age, Continuous48.6 years
STANDARD_DEVIATION 8.7
51.2 years
STANDARD_DEVIATION 7.3
52.6 years
STANDARD_DEVIATION 8
48.8 years
STANDARD_DEVIATION 9.1
53.5 years
STANDARD_DEVIATION 6.7
58.9 years
STANDARD_DEVIATION 12.9
52.5 years
STANDARD_DEVIATION 13
52.4 years
STANDARD_DEVIATION 10.5
Region of Enrollment
United States
6 participants7 participants6 participants6 participants6 participants7 participants18 participants56 participants
Sex: Female, Male
Female
6 Participants7 Participants6 Participants6 Participants6 Participants7 Participants18 Participants56 Participants
Sex: Female, Male
Male
0 Participants0 Participants0 Participants0 Participants0 Participants0 Participants0 Participants0 Participants

Adverse events

Event typeEG000
affected / at risk
EG001
affected / at risk
EG002
affected / at risk
EG003
affected / at risk
EG004
affected / at risk
EG005
affected / at risk
EG006
affected / at risk
deaths
Total, all-cause mortality
— / —— / —— / —— / —— / —— / —— / —
other
Total, other adverse events
6 / 67 / 76 / 66 / 66 / 67 / 71 / 18
serious
Total, serious adverse events
2 / 60 / 73 / 62 / 61 / 62 / 71 / 18

Outcome results

Primary

Pathologic Complete Response (pCR) Rate in Patients With HER2-negative Early-stage Breast Cancer

Pathological complete response (pCR) was defined as the disappearance of all invasive disease in the breast or if only residual in situ or lymph node disease is found. The pCR rate is presented with its 95% confidence interval for the Guided and Non-guided arms.

Time frame: 4-5 weeks after the fourth cycle of chemotherapy; approximately 16-17 weeks

Population: All eligible treated patients. The three patients not included are two who had allergic reactions to the assigned treatment, and one with metastatic disease on biopsy of a spine lesion at the end of assigned treatment so never went to surgery.

ArmMeasureValue (NUMBER)
Guided ArmPathologic Complete Response (pCR) Rate in Patients With HER2-negative Early-stage Breast Cancer16.7 percentage of participants
Non-Guided ArmPathologic Complete Response (pCR) Rate in Patients With HER2-negative Early-stage Breast Cancer9.1 percentage of participants
Secondary

Clinical Response Using WHO Criteria

WHO criteria are based on the sum of the products of the longest axis and the longest perpendicular axis. Bi-dimensional measurements were taken of all breast lesions and axillary nodes using the best imaging modality performed after completion of assigned therapy. Clinical Complete Response (cCR): Disappearance of all target lesions by physical exam and best imaging modality. Clinical Partial Response (cPR): At least a 30% decrease in the sum of the longest diameter (LD) of target lesions taking as reference the baseline sum LD. Stable Disease (SD): Neither sufficient shrinkage to qualify for PR nor sufficient increase to qualify for PD taking as references the sum LD at treatment initiation. Patients having a documented response with no reconfirmation of the response will be listed with stable disease. Progression (PD): At least a 20% increase in the sum of the LD of target lesions or the appearance of one or more new lesion.

Time frame: 12 weeks, 2-3 weeks after the fourth cycle of chemotherapy

Population: All eligible treated patients were used in this analysis.

ArmMeasureGroupValue (NUMBER)
Guided ArmClinical Response Using WHO CriteriaPartial Response (cPR)15 participants
Guided ArmClinical Response Using WHO CriteriaProgressive Disease1 participants
Guided ArmClinical Response Using WHO CriteriaStable Disease6 participants
Guided ArmClinical Response Using WHO CriteriaNot Evaluable/Not Assessed1 participants
Guided ArmClinical Response Using WHO CriteriaComplete Response (cCR)2 participants
Non-Guided ArmClinical Response Using WHO CriteriaNot Evaluable/Not Assessed2 participants
Non-Guided ArmClinical Response Using WHO CriteriaComplete Response (cCR)2 participants
Non-Guided ArmClinical Response Using WHO CriteriaPartial Response (cPR)7 participants
Non-Guided ArmClinical Response Using WHO CriteriaStable Disease2 participants
Non-Guided ArmClinical Response Using WHO CriteriaProgressive Disease0 participants
Secondary

Disease-free Survival

Disease-free survival is defined as the length of time from enrollment to local or distant disease recurrence, whichever comes first; disease-free deaths are censored. The 2-year disease-free survival rate is estimated with its 95% confidence interval.

Time frame: 2 years

Population: All eligible treated patients were used in this analysis.

ArmMeasureValue (NUMBER)
Guided ArmDisease-free Survival92 estimated % of participants disease-free
Non-Guided ArmDisease-free Survival89 estimated % of participants disease-free
Secondary

Economic Impact of Using Genomic Assessment to Guide Management.

Economic Impact (i.e., cost of care) will be calculated by first assessing the quantity of clinical resources used by each patient in the study arm, and then assigning a cost to each resource using cost information derived from a costing study to be undertaken outside of this protocol.

Time frame: 5 years

Population: Since these data were not collected, this analysis could not be done.

Secondary

Overall Survival

Overall survival is defined as the time from enrollment to death due to any cause. The 2-year overall survival rate is estimated with the Kaplan-Meier method.

Time frame: 2 years

Population: All eligible treated patients with known follow-up status.

ArmMeasureValue (NUMBER)
Guided ArmOverall Survival96 Estimated % of participants surviving
Non-Guided ArmOverall Survival100 Estimated % of participants surviving
Secondary

Patients' Perceptions of Participating in a Clinical Trial Evaluating Cancer Genomics for PST of Early-stage Breast Cancer.

A short questionnaire was administered at baseline (the day chemotherapy was started) and following post-surgical medical oncology evaluation to assess the patient's understanding of the study being conducted, and the patient's expectations of the treatment. Due to space limitations, the full survey is presented in the Detailed Description.

Time frame: 1 year

Population: The overall enrollment was insufficient to provide for any substantive analysis.

Secondary

Percentage of Patients Who Had Breast-conserving Surgery With Negative Margins

The percentage of patients who had breast-conserving surgery with negative margins, measured in patients with T2 and T3 tumors classified as requiring mastectomy at baseline.

Time frame: 6 months

Population: Since final margin status was not collected, this analysis could not be done.

Secondary

Probabilities of Being Sensitive to AC and TC as Determined by the Patient's Genomic Signatures

To determine in early stage breast cancer treated with PST whether genomic profiling can identify drug-sensitive and drug-resistant patients including a comparison of subgroups for the two individual regimens (i.e. AC and TC). To determine if the 60% cutoff for the genomic profiles is optimal in predicting the response to chemotherapy regimens.To describe the performance of the genomic profiles in assessing the relative responsiveness of: 1) Patients predicted to be resistant to both chemotherapy regimens; and 2) Patients randomly assigned to one treatment whose genomic profiles suggest receiving the other regimen (in both AC and TC subgroups).

Time frame: 10 years

Population: This outcome is not summarized due to irreproducibility of the genomics-based prediction model and resulting probability estimates

Secondary

Sites of Recurrence

Sites of Recurrence is a categorical outcome whose possible values are the organ-specific sites at which disease recurrence was observed. A patient may recur at more than one site.

Time frame: 10 years

Population: All eligible treated patients. Four of these 38 participants experienced recurrence of their breast cancer; two of the four patients had multiple sites of recurrence.

ArmMeasureGroupValue (NUMBER)
Guided ArmSites of RecurrenceLung1 participants
Guided ArmSites of RecurrenceLiver2 participants
Guided ArmSites of RecurrenceBone3 participants
Guided ArmSites of RecurrenceBrain1 participants
Guided ArmSites of RecurrenceChest Wall1 participants
Non-Guided ArmSites of RecurrenceChest Wall0 participants
Non-Guided ArmSites of RecurrenceBrain0 participants
Non-Guided ArmSites of RecurrenceLiver0 participants
Non-Guided ArmSites of RecurrenceLung0 participants
Non-Guided ArmSites of RecurrenceBone1 participants
Secondary

To Percentage of Patients Who Had Breast-conserving Surgery at First Attempt.

The percentage of patients who had breast-conserving surgery at first attempt, measured only in patients with T2 tumors classified as potential candidates for breast conservation.

Time frame: 6 months

Population: Data from all eligible patients with non-missing values on this outcome were used.

ArmMeasureValue (NUMBER)
Guided ArmTo Percentage of Patients Who Had Breast-conserving Surgery at First Attempt.67 percentage of T2 tumor patients
Non-Guided ArmTo Percentage of Patients Who Had Breast-conserving Surgery at First Attempt.100 percentage of T2 tumor patients

Source: ClinicalTrials.gov · Data processed: Feb 4, 2026